Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
Showing :
questions
1
vote
4
replies
598
views
bioinformatics tutorial on Oxford Nanopore Technologies
oxford
nanopore
updated 12 weeks ago by
GenoMax
150k • written 3 months ago by
Bogdan
★ 1.4k
8
votes
16
replies
6.1k
views
9 follow
visualize CNV data based on WGS
CNV
updated 13 months ago by
clealk
▴ 70 • written 7.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
443
views
filtering SNV/INDEL in tumor-only WGS samples
Tumor-only
samples
17 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
875
views
filtering variants in a Strelka2 VCF file based on AD and AF
Filter
VCF
19 months ago by
Bogdan
★ 1.4k
0
votes
0
replies
508
views
Copy Number Alteration and Loss or Heterozygosity
LOH
CNA
copy-number
updated 22 months ago by
Ram
45k • written 22 months ago by
Bogdan
★ 1.4k
2
votes
3
replies
1.3k
views
fitting a copy number profile to know CNV signatures
CNV
copy
number
LOH
CNA
updated 23 months ago by
LauferVA
4.7k • written 2.0 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
552
views
allelic copy number variation
LOH
CNA
CNV
copy-number
updated 2.0 years ago by
Ram
45k • written 2.0 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
542
views
alelle - specific CNA/LOH
cancer
CNV
genomics
LOH
CNA
2.1 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
442
views
network alignment and network regression
network
2.2 years ago by
Bogdan
★ 1.4k
1
vote
0
replies
655
views
CNA/LOH caller on WGS data and chromosomal instability index
CNA
CNV
2.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
779
views
downloading the VCF files of CCLE project (or cancer genomics WGS)
cancer
genomics
WGS
CCLE
VCF
2.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
518
views
packages to detect chromoanagenesis phenomena in germline or cancer genomes
ShatterProof
2.3 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
434
views
clustering of genome segments
cancer
genomics
epigenetics
2.4 years ago by
Bogdan
★ 1.4k
3
votes
2
replies
1.0k
views
wig2bed and counting the reads in the peaks
bedtools
ChIP-seq
deeptools
bedops
updated 22 months ago by
Ram
45k • written 2.5 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
1.6k
views
normalize and compare bigwig files
bigwig
updated 2.5 years ago by
Matthias Zepper
5.1k • written 2.5 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
941
views
calling peaks in ChIP-seq datasets from bedgraph files
ChIP-seq
MACS2
updated 2.6 years ago by
Marco Pannone
▴ 810 • written 2.6 years ago by
Bogdan
★ 1.4k
0
votes
11
replies
2.6k
views
paired-end reads, idxstats, and samtools and grep
samtools
updated 2.6 years ago by
LauferVA
4.7k • written 2.6 years ago by
Bogdan
★ 1.4k
5
votes
8
replies
2.7k
views
converting bedgraph to bigwig by not using ucsc tools
bedgraph
bigwig
2.6 years ago by
Bogdan
★ 1.4k
3
votes
3
replies
1.4k
views
CWL and Arvados
CWL
workflow
manager
2.7 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
857
views
SNV, CNA, SV
SV
CNA
SNV
updated 2.7 years ago by
LauferVA
4.7k • written 2.7 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
614
views
extracting sequences from a bam file
bam
updated 2.7 years ago by
LChart
4.9k • written 2.7 years ago by
Bogdan
★ 1.4k
1
vote
3
replies
1.5k
views
comparisons between 2 ChIP-seq datasets
ChIP-seq
updated 2.9 years ago by
ATpoint
87k • written 2.9 years ago by
Bogdan
★ 1.4k
4
votes
3
replies
1.9k
views
computing chromothripsis on cancer genomes
snp
cnv
sv
cancer
updated 2.9 years ago by
Thind amarinder
▴ 340 • written 6.7 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
788
views
browser to visualize single cell data
scATAC-seq
updated 2.9 years ago by
lieven.sterck
15k • written 2.9 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
476
views
HIC databases
Hi-C
3.0 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
832
views
scATAC-seq
scATAC-seq
3.0 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
551
views
ssvQC
ssvQC
3.1 years ago by
Bogdan
★ 1.4k
0
votes
5
replies
2.0k
views
saving png images and X11
scripting
saving
images
and
2.9 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
728
views
HOMER on AWS
HOMER
updated 11 months ago by
clairechung112
▴ 10 • written 3.2 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
805
views
compare the background levels in two chip-seq experiments
ChIPseq
updated 3.2 years ago by
seidel
11k • written 3.2 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
800
views
interchromosomal interactions and 4C
4C
3.2 years ago by
Bogdan
★ 1.4k
1
vote
4
replies
1.1k
views
compare ChIP-seq datasets in two cell lines
ChIP-seq
3.2 years ago by
Bogdan
★ 1.4k
21
votes
10
replies
13k
views
7 follow
workflow management system : WDL, CWL, Ruffus, SnakeMake, etc
pipeline
language
updated 3.0 years ago by
dariober
15k • written 6.5 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
782
views
4C packages
4C
updated 3.2 years ago by
LauferVA
4.7k • written 3.2 years ago by
Bogdan
★ 1.4k
5
votes
4
replies
2.4k
views
6 follow
bioinformatics pipelines on GCP or AWS
RNA-seq
google
ChIP-seq
cloud
updated 3.0 years ago by
LauferVA
4.7k • written 3.6 years ago by
Bogdan
★ 1.4k
1
vote
1
reply
1.1k
views
shiny apps for DEseq2, edgeR, limma
shiny
limma
DEseq2
edgeR
updated 3.3 years ago by
tbkuipers
▴ 30 • written 3.3 years ago by
Bogdan
★ 1.4k
2
votes
1
reply
3.5k
views
heatmap of genes pseudotime in monocle3
monocle2
monocle3
and
14 months ago by
Bogdan
★ 1.4k
0
votes
2
replies
1.5k
views
monocle3 and spData
monocle3
3.4 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
942
views
convert monocle3 into monocle2 cds
monocle
3.5 years ago by
Bogdan
★ 1.4k
1
vote
1
reply
647
views
scanning sequences or promoter sequences with specific motifs
motifs
updated 3.6 years ago by
cpad0112
21k • written 3.6 years ago by
Bogdan
★ 1.4k
0
votes
4
replies
1.4k
views
batch correction in ChIp-seq data
batch
ChIP-seq
updated 3.7 years ago by
rpolicastro
13k • written 3.7 years ago by
Bogdan
★ 1.4k
1
vote
3
replies
1.3k
views
extracting a gene from a gmt file
gmt
pathway
updated 2.4 years ago by
Ram
45k • written 3.7 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
971
views
downloading fastq files from galaxy
galaxy
updated 3.8 years ago by
swbarnes2
14k • written 3.8 years ago by
Bogdan
★ 1.4k
0
votes
0
replies
699
views
about the batch correction and integration and normalization of scRNA-seq data
normalization
scRNA-seq
4.0 years ago by
Bogdan
★ 1.4k
6
votes
3
replies
1.4k
views
recent Hi-C databases
hi-C
4C
3C
updated 4.0 years ago by
kalavattam
▴ 330 • written 4.3 years ago by
Bogdan
★ 1.4k
3
votes
1
reply
838
views
HI-C analysis in the cloud environment
HI-C
updated 4.0 years ago by
kalavattam
▴ 330 • written 4.1 years ago by
Bogdan
★ 1.4k
0
votes
3
replies
1.4k
views
to annotate BEDPE files
bedtools
annotate
updated 18 months ago by
Lhl
▴ 760 • written 4.1 years ago by
Bogdan
★ 1.4k
0
votes
2
replies
580
views
a simple question about file permissions
SLURM cluster
operating system
4.1 years ago by
Bogdan
★ 1.4k
0
votes
1
reply
1.2k
views
CUT&TAG and CUT&RUN
ChIP-Seq
updated 4.2 years ago by
i.sudbery
21k • written 4.2 years ago by
Bogdan
★ 1.4k
1
vote
5
replies
2.5k
views
scRNA-seq, MONOCLE3, and trajectory reconstruction, and Moran I statistics
scRNA-seq
updated 4.2 years ago by
VolEr
▴ 40 • written 4.5 years ago by
Bogdan
★ 1.4k
155 results • Page
1 of 4
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6