User: mxlsherry1992

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Posts by mxlsherry1992

<prev • 94 results • page 2 of 10 • next >
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Mfuzz for time series analysis
... Hi, I have done a time series analysis using the Mfuzz software, but I don't know what is the y-axis means,....it said "expression change", so if it the foldchange for my raw data or what....? Thank you!! ...
rna-seq written 4 months ago by mxlsherry199230
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Comment: C: STAR mapping results
... hi here is the script I used, if that is the error... java -jar /tools/trimmomatic-0.36/trimmomatic-0.36.jar PE -threads 1 -phred33 /home/Chan9-1_R1_001.fastq /home/Chan9-1_R2_001.fastq /home/clean_data/Chan9-1_R1_left_paired_trimmed.fq /home/Chan9-1_R1_left_unpaired_trimmed.fq /home/Chan9-1_R2 ...
written 4 months ago by mxlsherry199230
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Comment: C: padj in DEseq2
... Hi, yes, but if know what is the full name for `padj`...just like `false discovery rate` for `FDR`. ...
written 5 months ago by mxlsherry199230
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padj in DEseq2
... Hi all, if you know the full name of `padj` in DESeq2? I know if it corrected p-value, but It should be the abbreviation, so if you know the full name for that? ...
rna-seq written 5 months ago by mxlsherry199230 • updated 5 months ago by Brice Sarver3.5k
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STAR mapping parameter
... Hi, if you know what parameter in STAR can restrict the minimum bases matched to the genome..? Thanks ...
rna-seq written 5 months ago by mxlsherry199230 • updated 5 months ago by sklages90
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Comment: C: Blast2Go annotation question
... Got it !! Thank you so much!! ...
written 5 months ago by mxlsherry199230
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Comment: C: RNA sequencing how to see expression value
... Hi, sorry for the unclear statement, I don't need to compare the expression value between A, B species, I just want to delete the low expression genes within each species.. ...
written 5 months ago by mxlsherry199230
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Blast2Go annotation question
... Dear all, I got some sequence, and I did uniprot annotation for these sequences, but some of them showed like `uncharacterized protein LOC326903`, it seems the function still unclear, but if these if any other method that I could know the annotation for these important sequences? I know Blast2Go co ...
rna-seq written 5 months ago by mxlsherry199230 • updated 5 months ago by Mensur Dlakic4.0k
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RNA sequencing how to see expression value
... Dear all, I have two species RNA sequencing data, species A and B. the normal analysis was almost done, I got some key genes and now I want to see the expression value of these genes, and eliminate the genes that have low expression value (these genes may not play an important role in this species ...
rna-seq written 5 months ago by mxlsherry199230
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sequence extract problem
... Dear all, I have some ID in file1, and I want to extract its' corresponding line from file 2, but the ID in these two file is not complet match, if you know there is anyway I could use a command line for that? I got two command line here but it seems doestn't work. grep -Fwf file1.txt file2.t ...
rna-seq written 5 months ago by mxlsherry199230 • updated 5 months ago by Pierre Lindenbaum127k

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Rising Star 7 months ago, created 50 posts within first three months of joining.

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