User: Anthony

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Anthony0
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Posts by Anthony

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Answer: A: Plotting Gwas Meta-Analysis Output From Metal
... Simple R code: pval <- runif(250) theory <- ppoints(length(pval)) qqplot(theory, pval, xlim=c(0,1), ylim=c(0,1)) abline(a=0,b=1) pval: the vector of p-value theory: the theoretical distribution Feel free to take the -log() if you wish. ...
written 13 months ago by Anthony0
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Is the bioconductor RRHO R package p-value computation for two.sided completely wrong ?
... Hi everybody, I am trying to do some rank-rank hyper-geometric overlap with the [RRHO][1] R package. I am using alternative="two.sided". The log p-value are very strange for multiple reasons (see `R/ExpressionAnalysis.R` function `numericListOverlap`): - the 0 is not taken care of for the compu ...
overlap rrho rank-rank hypergeometric overlap written 20 months ago by Anthony0
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Does salmon use phred scores while pseudoaligning (and/or validating mapping)?
... Dear Biostar Community, I would like to know if salmon uses phred scores while pseudoaligning (and/or validating mapping)? - I checked [Patro R, Duggal G, Love MI, Irizarry RA, Kingsford C. Salmon provides fast and bias-aware quantification of transcript expression. Nat Methods. 2017;1 ...
salmon phred written 20 months ago by Anthony0 • updated 18 months ago by karni_bedirian0

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