User: joshua.steier

gravatar for joshua.steier
Reputation:
20
Status:
New User
Location:
Last seen:
1 year ago
Joined:
1 year ago
Email:
j************@student.shu.edu

Posts by joshua.steier

<prev • 8 results • page 1 of 1 • next >
1
vote
0
answers
542
views
0
answers
Comment: C: Issue with replicating from a research paper-motifs
... Thanks! Using Conda was much better than the standard methods. I ran it on 4.11 and 4.8, the authors' results showed on both of those. So the version must be causing the discrepancy as you said. I'm going to try to replicate given the now correct motifs from the old version. Do you suppose it is als ...
written 12 months ago by joshua.steier20
0
votes
0
answers
542
views
0
answers
Comment: C: Issue with replicating from a research paper-motifs
... Update: I found out the authors are using MEME version 4.10.1. Do you think this likely caused the discrepancy? I'd like to test it out but I'm having some difficulty getting 4.10.1 to work on linux server. ...
written 12 months ago by joshua.steier20
0
votes
0
answers
542
views
0
answers
Comment: C: Issue with replicating from a research paper-motifs
... Thank you for your help :) ...
written 12 months ago by joshua.steier20
0
votes
0
answers
542
views
0
answers
Comment: C: Issue with replicating from a research paper-motifs
... Thanks for adding it to the question, your help is greatly appreciated. I looked at my results again and couldn't find that motif. I'll try contacting the authors, I appreciate your suggestions. ...
written 12 months ago by joshua.steier20
1
vote
0
answers
542
views
0
answers
Comment: C: Issue with replicating from a research paper-motifs
... Hi, I just ran MEME under that version for the motifs and got the same results as I got before. ...
written 12 months ago by joshua.steier20
0
votes
0
answers
542
views
0
answers
Comment: C: Issue with replicating from a research paper-motifs
... You're correct to address that, I believe our MEME versions are different. The one I'm using is 5.0.5 and the one they used is most likely 5.0.0. Would the difference in version cause this much of a difference? ...
written 13 months ago by joshua.steier20
0
votes
0
answers
542
views
0
answers
Comment: C: Issue with replicating from a research paper-motifs
... Here is the Motif they are showing: (57) ![motiftheygot][1] Here is the motif I got: ![motifIgot][2] [1]: https://i.ibb.co/MPx3kfz/motif.png [2]: https://i.ibb.co/x7P87Lz/motif-Igot.png ...
written 13 months ago by joshua.steier20 • updated 13 months ago by geek_y11k
2
votes
0
answers
542
views
0
answers
Issue with replicating from a research paper-motifs
... Greetings, I've been trying to replicate results from the following research article: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-018-2378-9 In the paper, there is a figure that describes motif #57 with a sequence logo and its position weight matrix. I took the data from th ...
fasta rna meme sequence motif written 13 months ago by joshua.steier20 • updated 13 months ago by geek_y11k

Latest awards to joshua.steier

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1187 users visited in the last hour