User: anikcropscience

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40
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5 days, 10 hours ago
Joined:
1 year, 10 months ago
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a**************@yahoo.com

Posts by anikcropscience

<prev • 51 results • page 1 of 6 • next >
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Comment: C: How to move multiple files to multiple folders in linux/mac?
... That is great. I have not tried snakemake yet. But it seems very useful for reproducible research. Thank you. ...
written 5 days ago by anikcropscience40
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Comment: C: How to move multiple files to multiple folders in linux/mac?
... Oh great. I will run it. See if it works. Thanks a lot. ...
written 6 days ago by anikcropscience40
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Comment: C: How to move multiple files to multiple folders in linux/mac?
... Thank you very much. That is awesome! ...
written 6 days ago by anikcropscience40
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How to move multiple files to multiple folders in linux/mac?
... Hello, I have a folder containing *.fastq.gz files (R1 and R2) for many samples. For example, in the folder "Raw_WGS", I have several files like > Sample_1_R1.fastq.gz, Sample_1_R2.fastq.gz, Sample_2_R1.fastq.gz, > Sample_2_R2.fastq.gz, Sample_3_R1.fastq.gz, Sample_3_R2.fastq.gz I have anot ...
genome assembly next-gen snp sequence written 6 days ago by anikcropscience40 • updated 6 days ago by Jeremy Leipzig19k
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Comment: C: How to remove duplicate SNP IDs from VCF files?
... I have tried this withs snps/all. But still showing the same output. ...
written 22 days ago by anikcropscience40
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Comment: C: How to remove duplicate SNP IDs from VCF files?
... I saw this post and used the --remove-duplicates command. But it is not working at all. ...
written 22 days ago by anikcropscience40
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How to remove duplicate SNP IDs from VCF files?
... Hello, I have a VCF file containing ~900K SNPs. There are some tri-allelic SNPs in the dataset. So, I used bcftools to split those tri-allelic SNPs into biallelic SNPs. Then I tried to remove the duplicated SNP IDs that were generated after splitting the tri-allelic SNPs. I used bcftools as well bu ...
genome sequence snp written 22 days ago by anikcropscience40 • updated 22 days ago by Kevin Blighe71k
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How to conduct linkage disequilibrium analysis in R?
... Can someone please provide me some useful tutorial links to perform linkage disequilibrium analysis? I have some significant SNPs from a GWAS study. Now, I want to do LD analysis and create an LD-heatmap using the r-square values. But struggling a bit with how to start. Some tutorials based on HapM ...
genome R snp written 8 weeks ago by anikcropscience40
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Comment: C: How to create a sequence alignment graph?
... Hello, thank you for your elaborate answer. Yes, it worked perfectly. I did not have any problems while running the code or manipulating the graphic features. I highly appreciate all your efforts into this. Thank you very much. For now, the ROI options is not necessary at all for my paper. But in ...
written 9 weeks ago by anikcropscience40
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Comment: C: How to create a sequence alignment graph?
... Yes, the sequence is 1944 bp long. The problem is, I have SNP in multiple positions so if I need to zoom in then I would have to do it multiple times in the same figure, which is not what I want in a publication. And the figure is going to be included in a manuscript (I will surely cite your GitHub ...
written 9 weeks ago by anikcropscience40

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Popular Question 3 months ago, created a question with more than 1,000 views. For How to do a Haplotype based GWAS?

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