User: anikcropscience

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Posts by anikcropscience

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Comment: C: How to do a Haplotype based GWAS?
... Ok thanks a lot for the information. ...
written 15 days ago by anikcropscience10
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Comment: C: How to do a Haplotype based GWAS?
... This can be done with Vcftools or bcftools? Is bcftools included in Plink? Sorry, if the question is naive. I am new in this field. ...
written 16 days ago by anikcropscience10
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Comment: A: How to do a Haplotype based GWAS?
... Thank you very much Kevin. But the problem is, Ihave quite a few SNPs that are multiallelic and I do not want to loose them. So If I import those in Plink they are lost because plink only accepts biallelic SNPs. Do you have any suggestions on how can I keep those SNPs that are multiallelic? Anik ...
written 16 days ago by anikcropscience10
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How to do a Haplotype based GWAS?
... Hello, this is my first post in this renowned group. Acutally, I am struggling with Haplotype based GWAS. I am doing GWAS on a plant pathogen. The single SNP GWAS has yielded any significant result. So, I have decided to use Haplotype based GWAS. I have a VCF file containing 717045 SNPs. I used Plin ...
genome plink snp written 19 days ago by anikcropscience10

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