User: ahclugtenberg

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Posts by ahclugtenberg

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Comment: C: Get part of sequence from genome, given a start and stop position with Java.
... Yes, thank you! I was just looking at this library, but couldn't find the right function. ...
written 4 months ago by ahclugtenberg0
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Get part of sequence from genome, given a start and stop position with Java.
... I've got VCF-like files with start, stop, REF and ALT columns. I need to check that the REF position from the variants are the same as the one in the genome, to check if they're from the same built. I also need the surrounding nucleotides of the given position. Also, some of the REF columns are empt ...
genome vcf java written 4 months ago by ahclugtenberg0 • updated 13 days ago by Biostar ♦♦ 20

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