User: atoogoe

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atoogoe30
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New User
Location:
United States
Last seen:
4 years, 11 months ago
Joined:
7 years, 1 month ago
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Posts by atoogoe

<prev • 15 results • page 1 of 2 • next >
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... Eternal gratitude, Devon. I am getting results now! ...
written 5.0 years ago by atoogoe30
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... Thanks a lot! ...
written 5.0 years ago by atoogoe30
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... Thanks a lot! May I know how to determine whether a dataset is paired-end? ...
written 5.0 years ago by atoogoe30
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... Thanks! Here is it: https://www.dropbox.com/s/cs1q26hpx3zqw10/brain_control_1.bam?dl=0 ...
written 5.0 years ago by atoogoe30
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... I've checked. The bam file header has apprx 2739 chromosome entries. I used the same fasta file (downloaded from UCSC), which was used for the mapping.  ...
written 5.0 years ago by atoogoe30
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... So I modified the code to print only when "nc >0". The script ran all right but the output file was blank, save the headers. What this is telling me is that there was no coverage in the ENTIRE genome, not just particular chromosome(s)! Is this normal? ...
written 5.0 years ago by atoogoe30
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... Thanks a lot, dariober! I'll give it a go. I really appreciate your input! ...
written 5.0 years ago by atoogoe30
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Comment: C: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... Thanks, Devon, I will give it a try and get back to you. ...
written 5.0 years ago by atoogoe30
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Answer: A: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... But, while I await response from the authors, is there an alternate way of extracting the methylation ratios/frequencies from the bam file? Thanks! ...
written 5.0 years ago by atoogoe30
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Comment: A: ZeroDivisionError: float division by zero, from "methratio.py" in BSMAP
... Thanks, Matt! What's the best way out? ...
written 5.0 years ago by atoogoe30

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