User: rantanplan82

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Posts by rantanplan82

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Comment: C: Why is there a difference between compressed and uncompressed files when reading
... I'm so sorry that I wasted your time, but I figured it out. My problem was that I had both files, the compressed and the uncompressed one, within the same directory with basically the same file name, namely "test.fastq" and "test.fastq.gz" and since ShortRead::readFastq() does not take actual file n ...
written 12 days ago by rantanplan820
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Comment: C: Why is there a difference between compressed and uncompressed files when reading
... Thanks for trying it out and it seems you are right, for some mysterious reason its appears to be indeed a problem on my side. I followed your suggestion and I got the same results as you did. But I played around with it further and I could "solve" the initially stated problem, using the exact same ...
written 12 days ago by rantanplan820
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Why is there a difference between compressed and uncompressed files when reading it with the ShortRead::readFastq function?
... I'm trying to analyze some NGS files utilizing the Bioconductor-package ShortRead. Recently I "discovered" that the ShortRead-function readFastq() is able to read normal .fastq files and also compressed .fastq.gz files. In my understanding, the file format should not influence the results. dat ...
R bioconductor sequencing written 15 days ago by rantanplan820 • updated 15 days ago by benformatics840

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