User: jamesfischer047

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Posts by jamesfischer047

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Answer: A: Arabidopsis Gene ID Conversion (BioMart, CLC Genomics Workbench Output)
... Okay, I found a round about way to solve this, at least for my scenario. The gmt and fgsea information I'm using can only read gene symbols (e.g. "TRY") or entrez IDs. So I wrote a function to convert all of the information I had to either symbols or entrez IDs. The code is: reads <- as.mat ...
written 12 months ago by jamesfischer04710
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Arabidopsis Gene ID Conversion (BioMart, CLC Genomics Workbench Output)
... Hi all, I have an output of RNA-seq reads from CLC genomics workbench, for Arabidopsis thaliana. The list of genes contains a mix of gene names (i.e. "TRY", "TMM", "SVP", "FLC"), and IDs (e.g. "AT1G01390", "AT1G01310", "AT1G01240"). I would like to convert them all to gene names, so I can run it th ...
R biomart arabidopsis rna-seq written 12 months ago by jamesfischer04710 • updated 5 months ago by Biostar ♦♦ 20

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Scholar 12 months ago, created an answer that has been accepted. For A: Arabidopsis Gene ID Conversion (BioMart, CLC Genomics Workbench Output)

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