User: Melonhead

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Melonhead0
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Posts by Melonhead

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Comment: C: bowtie2 alignment to rRNA, ERCC spike ins, Repetitive Elements and index creatio
... Apologies, will do next time Thank you ...
written 10 days ago by Melonhead0
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bowtie2 alignment to rRNA, ERCC spike ins, Repetitive Elements and index creation
... I have downloaded .fastqfiles from SRA and now trying to filter out reads aligning to ERCC spike ins, rRNA and Repetitive Elements (from RepeatMasker). I would like to do this step by step, repeating the command on the unaligned results from the previous step using something like this: bowtie2 ...
alignment rna-seq written 10 days ago by Melonhead0 • updated 8 days ago by h.mon25k

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