User: lingziqi8278

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Posts by lingziqi8278

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Comment: C: Using STAR mapping multiple files get loop issue
... Hi caggtaagtat ,I am happy to tell you that I have known what's going on . It is RAM issue . The problem happened because I set 10 threads. Maybe it is too large to account . Hope this can help other people who encounter same problem like me . ...
written 11 months ago by lingziqi82780
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Comment: C: Using STAR mapping multiple files get loop issue
... yes, total RAM is 60GB . Anyway, Thanks for helping me . ^o^ ...
written 12 months ago by lingziqi82780
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Comment: C: Using STAR mapping multiple files get loop issue
... It just like this OUTPUT=/safedisk/CHIP_Seq/PhaseI/5_platypus_vcf OUT=/safedisk/CHIP_Seq/PhaseI/6_wasp_bam These two directory represent results of two different step ,${OUT} is where I store my STAR result. By the way ,I test STAR with one single file, "defunct"still happen. ...
written 12 months ago by lingziqi82780
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Comment: C: Using STAR mapping multiple files get loop issue
... Thanks ! It seem useful , I will try in my code . ...
written 12 months ago by lingziqi82780
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Comment: C: Using STAR mapping multiple files get loop issue
... Thanks a lot for answering ! There is no extra space between sample name in real code .I test STAR with single file , I type "ps" ,it look like this : PID TTY TIME CMD 29037 pts/1 00:00:00 bash 29088 pts/1 00:00:00 ps Looking like normal, however, when I type "ps -ef | g ...
written 12 months ago by lingziqi82780
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Using STAR mapping multiple files get loop issue
... Hello guys, Recently, I using STAR to map reads with multiple files ,here is the script: for NAME in individual1 individual2 individual3 do STAR --runMode alignReads \ --runThreadN 10 \ --genomeDir $REF \ --read ...
gene software error chip-seq rna-seq written 12 months ago by lingziqi82780 • updated 18 days ago by Biostar ♦♦ 20

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