User: leovam173

gravatar for leovam173
leovam1730
Reputation:
0
Status:
New User
Last seen:
1 week, 4 days ago
Joined:
1 year, 6 months ago
Email:
l********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by leovam173

<prev • 3 results • page 1 of 1 • next >
1
vote
1
answer
79
views
1
answer
How to call CNV without normal samples
... Hi, I wonder if it is possible to detect somatic copy number variation without normal samples? As far as I can remember is that most of the tools take into the normal.BAM and tumor.BAM and they compare the read count for the targeted region and that ratio can be used to infer CNV. However, if there ...
cnv sequencing written 14 days ago by leovam1730 • updated 14 days ago by abedkurdi1030
1
vote
0
answers
155
views
0
answers
how to set the number of segments?
... Hi, I am using CNVkit to detect CNVs on target sequencing data. However, I found that the output *cns* file merges all the exons for one gene. For example, in my bed file, I have multiple exons in *cnr* file for BRCA1: gene BRCA1|x23 BRCA1|x22 BRCA1|x21 ... in the *cns* file, it merged all t ...
cnvkit written 5 months ago by leovam1730
1
vote
0
answers
279
views
0
answers
Not understand the value in VCF file
... Hi, I am new to sequencing analysis. I got the vcf file and need some help to understand the meaning. In the last two columns, there are some rows like: GT:CNADJ 0|1:2, I know 0|1 represent hetero, and CNADJ is the copy number of the adjacency (not sure what it is) but why there is only one numb ...
genome sv copy number sequencing written 15 months ago by leovam1730

Latest awards to leovam173

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2083 users visited in the last hour