User: shoujun.gu

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shoujun.gu0
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Posts by shoujun.gu

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Comment: C: How to draw heatmap plot use cnv seg data called by gatk?
... I think you have to write some codes to manually convert these two formats... ...
written 2 days ago by shoujun.gu0
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Answer: A: Non sc-RNA-Seq and Cell Type
... R: Seurat Python: Scanpy Both well documented. ...
written 2 days ago by shoujun.gu0
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Comment: C: are there any easy way to build a gmx format file?
... Thank you! I will try it. ...
written 4 days ago by shoujun.gu0
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Comment: C: are there any easy way to build a gmx format file?
... For example, I have several files. For each file, each line is a gene name, such as: gene1 gene2 gene3 ... but different files has different number of genes. I want to combine these gene list files into a single gmx file, in which first row of each column is the file name. I'd like to know whe ...
written 4 days ago by shoujun.gu0
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are there any easy way to build a gmx format file?
... I have several sets of genes. I'd like to know are there any easy way to make a gmx file? Thanks. ...
gene written 4 days ago by shoujun.gu0
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PAGA plot question
... I am now using PAGA for trajectory inference. And after I use sc.tl.paga() to analysis my scRNASeq data, I tried to plot the cluster. And I found the result plot layout from plot function:1 ) sc.pl.paga(), and 2) sc.pl.paga_compare() are different (but in the tutorial example, they are same). I com ...
software error sequencing written 10 days ago by shoujun.gu0

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