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17
votes
9
replies
7.0k
views
6 follow
T2T-CHM13 "complete" human genome gff/gtf annotation file
genomics
updated 12 months ago by
GenoMax
141k • written 2.9 years ago by
joe
▴ 510
0
votes
0
replies
548
views
Comment:
Comment: pileup consolidation tool
14 months ago by
joe
▴ 510
0
votes
0
replies
548
views
Comment:
Comment: pileup consolidation tool
14 months ago by
joe
▴ 510
0
votes
3
replies
548
views
pileup consolidation tool
RNAseq
pileup
jacusa
samtools
14 months ago by
joe
▴ 510
3
votes
0
replies
865
views
Answer:
Answer: samtools markdup in Rsamtools
14 months ago by
joe
▴ 510
0
votes
0
replies
444
views
Answer:
Answer: NGS data analysis
15 months ago by
joe
▴ 510
0
votes
0
replies
746
views
Answer:
Answer: Classifying shotgun metagenomes with 16S rRNA database.
15 months ago by
joe
▴ 510
0
votes
1
reply
1.1k
views
Comment:
Comment: How to check for Over or Under-marking Duplicates in BAM files
15 months ago by
joe
▴ 510
0
votes
1
reply
943
views
Answer:
Answer: Some questions on RAD paired-end sequencing
15 months ago by
joe
▴ 510
0
votes
0
replies
1.1k
views
Comment:
Comment: information about genes from different databases and patents
15 months ago by
joe
▴ 510
1
vote
1
reply
1.1k
views
Comment:
Comment: information about genes from different databases and patents
15 months ago by
joe
▴ 510
1
vote
2
replies
1.1k
views
Answer:
Answer: information about genes from different databases and patents
15 months ago by
joe
▴ 510
0
votes
0
replies
325
views
Table summary for SNP linkages from same read
NGS
SNP
RNAseq
15 months ago by
joe
▴ 510
1
vote
1
reply
1.7k
views
Answer:
Answer: Is removing rRNAs, tRNAs, etc really a necessary step in the miRNA analysis?
15 months ago by
joe
▴ 510
0
votes
0
replies
2.6k
views
Comment:
Comment: samtools sort operation very slow, bottle-neck is external hard drive?
15 months ago by
joe
▴ 510
1
vote
0
replies
2.6k
views
Comment:
Comment: samtools sort operation very slow, bottle-neck is external hard drive?
15 months ago by
joe
▴ 510
1
vote
1
reply
2.6k
views
Comment:
Comment: samtools sort operation very slow, bottle-neck is external hard drive?
15 months ago by
joe
▴ 510
0
votes
1
reply
709
views
Comment:
Comment: create 'negative' bed annotation from bed
16 months ago by
joe
▴ 510
4
votes
3
replies
709
views
create 'negative' bed annotation from bed
bed
gtf
gff
updated 16 months ago by
Ram
43k • written 16 months ago by
joe
▴ 510
0
votes
0
replies
1.3k
views
Comment:
Comment: Compare two RNA-Seq log2fc tables
16 months ago by
joe
▴ 510
2
votes
1
reply
1.3k
views
Answer:
Answer: Compare two RNA-Seq log2fc tables
17 months ago by
joe
▴ 510
0
votes
0
replies
2.2k
views
Comment:
Comment: Laptop specs for MiniON
18 months ago by
joe
▴ 510
0
votes
1
reply
2.2k
views
Comment:
Comment: Laptop specs for MiniON
18 months ago by
joe
▴ 510
3
votes
1
reply
502
views
LSF bsub SSUSP job stdout
IBM
LSF
bsub
18 months ago by
joe
▴ 510
1
vote
0
replies
502
views
Answer:
Answer: LSF bsub SSUSP job stdout
18 months ago by
joe
▴ 510
0
votes
1
reply
854
views
Comment:
Comment: Explanation of BAM compression levels
18 months ago by
joe
▴ 510
5
votes
3
replies
854
views
Explanation of BAM compression levels
compression
BAM
updated 18 months ago by
LChart
3.9k • written 18 months ago by
joe
▴ 510
2
votes
3
replies
822
views
picard CollectRnaSeqMetrics gene coverage
picard
gatk
CollectRnaSeqMetrics
18 months ago by
joe
▴ 510
2
votes
0
replies
822
views
Answer:
Answer: picard CollectRnaSeqMetrics gene coverage
18 months ago by
joe
▴ 510
0
votes
0
replies
822
views
Comment:
Comment: picard CollectRnaSeqMetrics gene coverage
18 months ago by
joe
▴ 510
0
votes
0
replies
350
views
RSamtools get picard tags
RSamtools
samtools
R
RStudio
updated 10 months ago by
Ram
43k • written 19 months ago by
joe
▴ 510
0
votes
0
replies
376
views
16S (18S) rRNA primer design
taxonomy
primer
design
mopo16s
23 months ago by
joe
▴ 510
0
votes
0
replies
452
views
RSEM gff 'parent' field
RNAseq
transcriptomics
RSEM
2.4 years ago by
joe
▴ 510
0
votes
0
replies
2.4k
views
Comment:
Comment: Convert transcriptomic bam to genomic bam
2.5 years ago by
joe
▴ 510
0
votes
1
reply
2.4k
views
Comment:
Comment: Convert transcriptomic bam to genomic bam
2.5 years ago by
joe
▴ 510
0
votes
2
replies
2.4k
views
Comment:
Comment: Convert transcriptomic bam to genomic bam
2.5 years ago by
joe
▴ 510
0
votes
1
reply
2.4k
views
Comment:
Comment: Convert transcriptomic bam to genomic bam
2.5 years ago by
joe
▴ 510
0
votes
0
replies
2.4k
views
Comment:
Comment: Convert transcriptomic bam to genomic bam
2.5 years ago by
joe
▴ 510
2
votes
11
replies
2.4k
views
Convert transcriptomic bam to genomic bam
genome
bisulfite
bam
transcriptome
2.5 years ago by
joe
▴ 510
0
votes
0
replies
1.2k
views
Comment:
Comment: AlphaFold on AWS metrics
2.5 years ago by
joe
▴ 510
0
votes
2
replies
1.2k
views
AlphaFold on AWS metrics
AlphaFold
AWS
2.5 years ago by
joe
▴ 510
0
votes
0
replies
479
views
STAR bisulfite mapping
STAR
bisulfite
RNAseq
2.5 years ago by
joe
▴ 510
0
votes
0
replies
556
views
Additional nanopore barcodes for RNA long reads
RNAseq
NGS
nanopore
2.6 years ago by
joe
▴ 510
4
votes
3
replies
1.2k
views
UCSC MySQL access
UCSC
MySQL
updated 2.6 years ago by
Luis Nassar
▴ 650 • written 3.3 years ago by
joe
▴ 510
0
votes
0
replies
5.9k
views
Answer:
Answer: Extracting exons and transcripts from gff3/gtf
2.6 years ago by
joe
▴ 510
0
votes
0
replies
2.8k
views
Answer:
Answer: Segmentation fault (core dumped) error when running MUSCLE
2.6 years ago by
joe
▴ 510
1
vote
0
replies
1.5k
views
Answer:
Answer: RNAseq data mapping mostly to intergenic regions
2.6 years ago by
joe
▴ 510
0
votes
0
replies
1.0k
views
Comment:
Comment: convert genomic bigWig file to transcriptome space
2.6 years ago by
joe
▴ 510
0
votes
1
reply
1.0k
views
Comment:
Comment: convert genomic bigWig file to transcriptome space
2.6 years ago by
joe
▴ 510
2
votes
4
replies
1.0k
views
convert genomic bigWig file to transcriptome space
bigWig
bw
2.6 years ago by
joe
▴ 510
162 results • Page
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