User: niklas.lang

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Posts by niklas.lang

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Comment: C: scRNAseq: Split FASTQ into cell specific FASTQ Files
... My idea was to split the BAM File into several cell-specific BAM File by using the "CB" Tag. I don't know how this could possibly interfer the PolyA enrichment, so I would be glad to hear what your concerns are? ...
written 4 months ago by niklas.lang0
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Answer: A: Creating a cell by SNP matrix
... >I split my large bam file into one bam file per cell I am super happy that I came across your post this morning, Dominic! I've been searching for a way to do this for so long - so would be glad to hear how you managed to split one BAM file into one BAM file per cell? Did you use a specific to ...
written 4 months ago by niklas.lang0
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Answer: A: de novo variant SNP calling from barcoded single-cell data
... This Post was deleted. ...
written 4 months ago by niklas.lang0
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scRNAseq: Split FASTQ into cell specific FASTQ Files
... Hi ! I did scRNAseq (10XChromium) of cancer cells and now I am looking for a simple way to split my FASTQ Files into celll specific FASTQ Files. Alternativley split my BAM File into cell specific BAM Files - because I need one FASTQ (BAM) File per cell in order to do perform variant calling on the s ...
cell ranger bam rna-seq split demultiplex written 5 months ago by niklas.lang0 • updated 12 weeks ago by igor8.6k

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