User: m.holly.elmore

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Posts by m.holly.elmore

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Answer: A: Expression to tell bcftools consensus to treat phased heterozygotes differently
... Update: Petr Danecek added a [new option][1] to address this. [1]: https://github.com/samtools/bcftools/issues/1027 ...
written 17 months ago by m.holly.elmore10
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Expression to tell bcftools consensus to treat phased heterozygotes differently from unphased?
... **tl;dr: I want help writing an expression for bcftools consensus to tell it to put Ns in my haplotype alternate references when it comes across unphased heterozygous sites. Ideally, someone would just give me an expression for "when allele 1 and 2 are not the same and they are separated by a /, put ...
genome sequence snp written 18 months ago by m.holly.elmore10

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