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Posts by m.holly.elmore
... Update: Petr Danecek added a [new option] to address this. : https://github.com/samtools/bcftools/issues/1027 ...
... **tl;dr: I want help writing an expression for bcftools consensus to tell it to put Ns in my haplotype alternate references when it comes across unphased heterozygous sites. Ideally, someone would just give me an expression for "when allele 1 and 2 are not the same and they are separated by a /, put ...
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