User: srhic

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srhic0
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Posts by srhic

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Error processing Hi-data using HiCUP
... Hello, I am using the HiCUP pipeline to process my Hi-C data and am having some trouble. I am not sure if the error I am getting is related to the pipeline or my input file and would appreciate if anyone might have any idea of what may be causing this error. The code runs fine on test dataset provi ...
hi-c forum ngs hicup written 18 days ago by srhic0 • updated 18 days ago by WouterDeCoster39k
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Comment: C: Trimming adapters required for local alignment?
... Thanks, I didn't know fastqc works on bam files. The adapter content is less than 0.5% so I think I should be fine. ...
written 22 days ago by srhic0
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Trimming adapters required for local alignment?
... Hello, I am analyzing some Hi-C data and have a question about quality trimming. When I got the data I was told that the initial QC had already been done so I started analyzing the data without doing any preprocessing. I have already done quite a lot of analysis but recently got to know that the da ...
trimming adapter ngs hicexplorer written 23 days ago by srhic0

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