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4
votes
5
replies
14k
views
Take A Subset Of A Fastq Paired-End Sample
paired-end fastq rna-seq illumina
updated 11 months ago by 43k • written 11.1 years ago by ▴ 760
24
votes
9
replies
20k
views
8 follow
Download Geo Tar File Automatically From Linux/Unix
unix geo
updated 11 months ago by ▴ 10 • written 11.3 years ago by ▴ 760
9
votes
5
replies
7.7k
views
Genomic Bam To Transcriptome Bam
bam samtools
updated 7 months ago by 43k • written 10.4 years ago by ▴ 760
5
votes
3
replies
8.3k
views
Liftover Bam File
bam samtools liftover
updated 7.7 years ago by ★ 1.9k • written 10.6 years ago by ▴ 760
10
votes
8
replies
15k
views
Samtools Filter Reads Cigar Field
samtools cigar
updated 7.9 years ago by 20 • written 10.7 years ago by ▴ 760
2
votes
9
replies
6.3k
views
Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
alignment
updated 10.0 years ago by 8.2k • written 10.4 years ago by ▴ 760
10
votes
7
replies
8.9k
views
Download Geo Sra Data Using Aspera Connect
ncbi geo
updated 10.0 years ago by ▴ 10 • written 11.2 years ago by ▴ 760
2
votes
0
replies
11k
views
Answer: A: The Easiest/Fastest Way To Get From Bam To Tpm Or Rpkm
10.1 years ago by dfernan ▴ 760
8
votes
4
replies
6.8k
views
Samtools View Of A Sam File Entire Chromosome
samtools
updated 10.2 years ago by 20 • written 10.6 years ago by ▴ 760
0
votes
0
replies
5.5k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
10.3 years ago by dfernan ▴ 760
1
vote
4
replies
5.5k
views
Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
sra bam fastq
updated 10.3 years ago by 12k • written 10.3 years ago by ▴ 760
0
votes
0
replies
5.5k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
10.3 years ago by dfernan ▴ 760
0
votes
1
reply
6.3k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
10.4 years ago by dfernan ▴ 760
0
votes
1
reply
6.3k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
10.4 years ago by dfernan ▴ 760
0
votes
0
replies
6.3k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
10.4 years ago by dfernan ▴ 760
0
votes
0
replies
7.7k
views
Comment: C: Genomic Bam To Transcriptome Bam
10.4 years ago by dfernan ▴ 760
2
votes
0
replies
40k
views
Comment: C: Why Does Rna-Seq Read Count Fit Poisson Distribution?
10.5 years ago by dfernan ▴ 760
0
votes
0
replies
19k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
10.5 years ago by dfernan ▴ 760
0
votes
0
replies
19k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
10.5 years ago by dfernan ▴ 760
16
votes
7
replies
19k
views
Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
rnaseq rna-seq rna fastqc fastq
updated 10.5 years ago by 100k • written 10.5 years ago by ▴ 760
0
votes
0
replies
5.4k
views
Comment: C: Ensembl And Ucsc Gtfs To Match
10.5 years ago by dfernan ▴ 760
4
votes
2
replies
5.4k
views
Ensembl And Ucsc Gtfs To Match
gtf ensembl ucsc
10.5 years ago by dfernan ▴ 760
0
votes
0
replies
8.3k
views
Comment: C: Liftover Bam File
10.6 years ago by dfernan ▴ 760
52
votes
22
replies
40k
views
Extract Only Uniquely Mappable Reads From Bam Files
bam samtools
updated 10.7 years ago by • 0 • written 11.4 years ago by ▴ 760
0
votes
0
replies
15k
views
Comment: C: Samtools Filter Reads Cigar Field
10.7 years ago by dfernan ▴ 760
0
votes
0
replies
15k
views
Comment: C: Samtools Filter Reads Cigar Field
10.7 years ago by dfernan ▴ 760
0
votes
1
reply
15k
views
Comment: C: Samtools Filter Reads Cigar Field
10.7 years ago by dfernan ▴ 760
2
votes
2
replies
3.2k
views
Looking For Motif Finding Tools That Work On Broad Peaks
motif chip-seq
updated 10.7 years ago by ▴ 520 • written 11.4 years ago by ▴ 760
1
vote
0
replies
1.7k
views
Snp Density Across Species, And Model Organisms
snp
10.7 years ago by dfernan ▴ 760
3
votes
3
replies
2.9k
views
Python Check Correct Bam Or Correct Fastq Format
fastq bam python
updated 10.8 years ago by 20 • written 10.9 years ago by ▴ 760
0
votes
0
replies
5.0k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
11.0 years ago by dfernan ▴ 760
6
votes
5
replies
5.0k
views
Known Snps For C57Bl/6 And Cast/Eij
snp dbsnp
updated 11.0 years ago by 16k • written 11.0 years ago by ▴ 760
0
votes
1
reply
5.0k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
11.0 years ago by dfernan ▴ 760
0
votes
0
replies
13k
views
Comment: C: Samtools Count Paired-End Reads
11.0 years ago by dfernan ▴ 760
2
votes
4
replies
13k
views
Samtools Count Paired-End Reads
paired-end samtools tophat
11.0 years ago by dfernan ▴ 760
0
votes
0
replies
13k
views
Comment: C: Samtools Count Paired-End Reads
11.0 years ago by dfernan ▴ 760
0
votes
0
replies
6.4k
views
Comment: C: Bwa -N 1 -N Options, What They Mean?
11.0 years ago by dfernan ▴ 760
5
votes
5
replies
6.4k
views
Bwa -N 1 -N Options, What They Mean?
bwa
updated 11.0 years ago by 12k • written 11.0 years ago by ▴ 760
0
votes
0
replies
87k
views
Comment: C: Selecting Random Pairs From Fastq?
11.0 years ago by dfernan ▴ 760
0
votes
1
reply
87k
views
Comment: C: Selecting Random Pairs From Fastq?
11.1 years ago by dfernan ▴ 760
0
votes
0
replies
14k
views
Comment: C: Take A Subset Of A Fastq Paired-End Sample
11.1 years ago by dfernan ▴ 760
0
votes
0
replies
14k
views
Comment: Comment: Take A Subset Of A Fastq Paired-End Sample
updated 11 months ago by 43k • written 11.1 years ago by ▴ 760
0
votes
0
replies
2.4k
views
Gtf/Gff File Of Repetitive Elements To Use With Tophat2
gtf tophat2
11.1 years ago by dfernan ▴ 760
21
votes
5
replies
4.3k
views
Where Were The Human Genome Reference Samples Taken From?
reference genome project
updated 11.2 years ago by 19k • written 11.2 years ago by ▴ 760
0
votes
0
replies
4.3k
views
Comment: C: Where Were The Human Genome Reference Samples Taken From?
11.2 years ago by dfernan ▴ 760
35
votes
5
replies
27k
views
What Does Cds And Exon Mean In A Gtf File?
gtf rna-seq
updated 11.2 years ago by 100k • written 11.2 years ago by ▴ 760
1
vote
0
replies
22k
views
Comment: C: Transforming And Manipulating Color Space Reads
11.2 years ago by dfernan ▴ 760
0
votes
0
replies
6.0k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
11.2 years ago by dfernan ▴ 760
5
votes
6
replies
6.0k
views
How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable For The Tophat Rna-Seq Pipeline?
tophat sra geo bowtie rna-seq
11.2 years ago by dfernan ▴ 760
1
vote
0
replies
6.0k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
11.2 years ago by dfernan ▴ 760
82 results • Page 1 of 2
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