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4
votes
5
replies
13k
views
Take A Subset Of A Fastq Paired-End Sample
paired-end fastq rna-seq illumina
updated 7 days ago by 39k • written 10.2 years ago by ▴ 730
22
votes
9
replies
17k
views
8 follow
Download Geo Tar File Automatically From Linux/Unix
unix geo
updated 4 weeks ago by ▴ 10 • written 10.4 years ago by ▴ 730
8
votes
5
replies
6.7k
views
Genomic Bam To Transcriptome Bam
bam samtools
updated 13 months ago by ▴ 240 • written 9.5 years ago by ▴ 730
5
votes
3
replies
7.4k
views
Liftover Bam File
bam samtools liftover
updated 6.8 years ago by ★ 1.9k • written 9.7 years ago by ▴ 730
9
votes
8
replies
13k
views
Samtools Filter Reads Cigar Field
samtools cigar
updated 7.1 years ago by 20 • written 9.8 years ago by ▴ 730
2
votes
9
replies
5.7k
views
Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
alignment
updated 9.1 years ago by 8.2k • written 9.5 years ago by ▴ 730
10
votes
7
replies
8.3k
views
Download Geo Sra Data Using Aspera Connect
ncbi geo
updated 9.1 years ago by ▴ 10 • written 10.3 years ago by ▴ 730
2
votes
0
replies
10k
views
Answer: A: The Easiest/Fastest Way To Get From Bam To Tpm Or Rpkm
9.3 years ago by dfernan ▴ 730
8
votes
4
replies
6.5k
views
Samtools View Of A Sam File Entire Chromosome
samtools
updated 9.3 years ago by 20 • written 9.7 years ago by ▴ 730
0
votes
0
replies
5.2k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
9.4 years ago by dfernan ▴ 730
1
vote
4
replies
5.2k
views
Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
sra bam fastq
updated 9.4 years ago by 12k • written 9.4 years ago by ▴ 730
0
votes
0
replies
5.2k
views
Comment: C: Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
9.4 years ago by dfernan ▴ 730
0
votes
1
reply
5.7k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
9.5 years ago by dfernan ▴ 730
0
votes
1
reply
5.7k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
9.5 years ago by dfernan ▴ 730
0
votes
0
replies
5.7k
views
Comment: C: Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
9.5 years ago by dfernan ▴ 730
0
votes
0
replies
6.7k
views
Comment: C: Genomic Bam To Transcriptome Bam
9.5 years ago by dfernan ▴ 730
2
votes
0
replies
37k
views
Comment: C: Why Does Rna-Seq Read Count Fit Poisson Distribution?
9.6 years ago by dfernan ▴ 730
0
votes
0
replies
19k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
9.6 years ago by dfernan ▴ 730
0
votes
0
replies
19k
views
Comment: C: Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
9.6 years ago by dfernan ▴ 730
16
votes
7
replies
19k
views
Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
rnaseq rna-seq rna fastqc fastq
updated 9.6 years ago by 98k • written 9.6 years ago by ▴ 730
0
votes
0
replies
5.1k
views
Comment: C: Ensembl And Ucsc Gtfs To Match
9.7 years ago by dfernan ▴ 730
2
votes
2
replies
5.1k
views
Ensembl And Ucsc Gtfs To Match
gtf ensembl ucsc
9.7 years ago by dfernan ▴ 730
0
votes
0
replies
7.4k
views
Comment: C: Liftover Bam File
9.7 years ago by dfernan ▴ 730
52
votes
22
replies
37k
views
Extract Only Uniquely Mappable Reads From Bam Files
bam samtools
updated 9.8 years ago by • 0 • written 10.5 years ago by ▴ 730
0
votes
0
replies
13k
views
Comment: C: Samtools Filter Reads Cigar Field
9.8 years ago by dfernan ▴ 730
0
votes
0
replies
13k
views
Comment: C: Samtools Filter Reads Cigar Field
9.8 years ago by dfernan ▴ 730
0
votes
1
reply
13k
views
Comment: C: Samtools Filter Reads Cigar Field
9.8 years ago by dfernan ▴ 730
2
votes
2
replies
3.0k
views
Looking For Motif Finding Tools That Work On Broad Peaks
motif chip-seq
updated 9.8 years ago by ▴ 520 • written 10.6 years ago by ▴ 730
1
vote
0
replies
1.6k
views
Snp Density Across Species, And Model Organisms
snp
9.9 years ago by dfernan ▴ 730
3
votes
3
replies
2.6k
views
Python Check Correct Bam Or Correct Fastq Format
fastq bam python
updated 9.9 years ago by 20 • written 10.0 years ago by ▴ 730
0
votes
0
replies
4.5k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
10.1 years ago by dfernan ▴ 730
6
votes
5
replies
4.5k
views
Known Snps For C57Bl/6 And Cast/Eij
snp dbsnp
updated 10.1 years ago by 16k • written 10.1 years ago by ▴ 730
0
votes
1
reply
4.5k
views
Comment: C: Known Snps For C57Bl/6 And Cast/Eij
10.1 years ago by dfernan ▴ 730
0
votes
0
replies
12k
views
Comment: C: Samtools Count Paired-End Reads
10.1 years ago by dfernan ▴ 730
2
votes
4
replies
12k
views
Samtools Count Paired-End Reads
paired-end samtools tophat
10.1 years ago by dfernan ▴ 730
0
votes
0
replies
12k
views
Comment: C: Samtools Count Paired-End Reads
10.1 years ago by dfernan ▴ 730
0
votes
0
replies
5.8k
views
Comment: C: Bwa -N 1 -N Options, What They Mean?
10.1 years ago by dfernan ▴ 730
5
votes
5
replies
5.8k
views
Bwa -N 1 -N Options, What They Mean?
bwa
updated 10.2 years ago by 12k • written 10.2 years ago by ▴ 730
0
votes
0
replies
77k
views
Comment: C: Selecting Random Pairs From Fastq?
10.2 years ago by dfernan ▴ 730
0
votes
1
reply
77k
views
Comment: C: Selecting Random Pairs From Fastq?
10.2 years ago by dfernan ▴ 730
0
votes
0
replies
13k
views
Comment: C: Take A Subset Of A Fastq Paired-End Sample
10.2 years ago by dfernan ▴ 730
0
votes
0
replies
13k
views
Comment: Comment: Take A Subset Of A Fastq Paired-End Sample
updated 7 days ago by 39k • written 10.2 years ago by ▴ 730
0
votes
0
replies
2.2k
views
Gtf/Gff File Of Repetitive Elements To Use With Tophat2
gtf tophat2
10.2 years ago by dfernan ▴ 730
21
votes
5
replies
3.9k
views
Where Were The Human Genome Reference Samples Taken From?
reference genome project
updated 10.3 years ago by 19k • written 10.3 years ago by ▴ 730
0
votes
0
replies
3.9k
views
Comment: C: Where Were The Human Genome Reference Samples Taken From?
10.3 years ago by dfernan ▴ 730
35
votes
5
replies
25k
views
What Does Cds And Exon Mean In A Gtf File?
gtf rna-seq
updated 10.3 years ago by 98k • written 10.3 years ago by ▴ 730
1
vote
0
replies
21k
views
Comment: C: Transforming And Manipulating Color Space Reads
10.3 years ago by dfernan ▴ 730
0
votes
0
replies
5.7k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
10.3 years ago by dfernan ▴ 730
5
votes
6
replies
5.7k
views
How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable For The Tophat Rna-Seq Pipeline?
tophat sra geo bowtie rna-seq
10.3 years ago by dfernan ▴ 730
1
vote
0
replies
5.7k
views
Comment: C: How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable Fo
10.3 years ago by dfernan ▴ 730
82 results • Page 1 of 2
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