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Showing :
questions
8
votes
5
replies
5.9k
views
Genomic Bam To Transcriptome Bam
bam
samtools
updated 3 months ago by
opplatek
▴ 230 • written 8.7 years ago by
dfernan
▴ 710
5
votes
3
replies
6.6k
views
Liftover Bam File
bam
samtools
liftover
updated 6.0 years ago by
microfuge
★ 1.9k • written 8.9 years ago by
dfernan
▴ 710
9
votes
8
replies
12k
views
Samtools Filter Reads Cigar Field
samtools
cigar
updated 6.3 years ago by
Biostar
20 • written 9.0 years ago by
dfernan
▴ 710
2
votes
9
replies
5.3k
views
Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
alignment
updated 8.3 years ago by
Charles Warden
8.1k • written 8.7 years ago by
dfernan
▴ 710
10
votes
7
replies
7.9k
views
Download Geo Sra Data Using Aspera Connect
ncbi
geo
updated 8.3 years ago by
baikalevi
▴ 10 • written 9.5 years ago by
dfernan
▴ 710
8
votes
4
replies
6.3k
views
Samtools View Of A Sam File Entire Chromosome
samtools
updated 8.5 years ago by
Biostar
20 • written 8.9 years ago by
dfernan
▴ 710
1
vote
4
replies
5.0k
views
Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
sra
bam
fastq
updated 8.6 years ago by
Ashutosh Pandey
12k • written 8.6 years ago by
dfernan
▴ 710
16
votes
7
replies
18k
views
Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
rnaseq
rna-seq
rna
fastqc
fastq
updated 8.8 years ago by
Istvan Albert
94k • written 8.8 years ago by
dfernan
▴ 710
2
votes
2
replies
4.9k
views
Ensembl And Ucsc Gtfs To Match
gtf
ensembl
ucsc
8.9 years ago by
dfernan
▴ 710
51
votes
22
replies
35k
views
Extract Only Uniquely Mappable Reads From Bam Files
bam
samtools
updated 9.0 years ago by
yifangt
• 0 • written 9.7 years ago by
dfernan
▴ 710
20
votes
8
replies
14k
views
6 follow
Download Geo Tar File Automatically From Linux/Unix
unix
geo
updated 9.0 years ago by
quentin.delettre
▴ 430 • written 9.6 years ago by
dfernan
▴ 710
2
votes
2
replies
2.8k
views
Looking For Motif Finding Tools That Work On Broad Peaks
motif
chip-seq
updated 9.0 years ago by
vj
▴ 500 • written 9.8 years ago by
dfernan
▴ 710
1
vote
0
replies
1.5k
views
Snp Density Across Species, And Model Organisms
snp
9.0 years ago by
dfernan
▴ 710
3
votes
3
replies
2.4k
views
Python Check Correct Bam Or Correct Fastq Format
fastq
bam
python
updated 9.1 years ago by
Biostar
20 • written 9.2 years ago by
dfernan
▴ 710
6
votes
5
replies
4.1k
views
Known Snps For C57Bl/6 And Cast/Eij
snp
dbsnp
updated 9.3 years ago by
Larry_Parnell
16k • written 9.3 years ago by
dfernan
▴ 710
2
votes
4
replies
11k
views
Samtools Count Paired-End Reads
paired-end
samtools
tophat
9.3 years ago by
dfernan
▴ 710
5
votes
5
replies
5.3k
views
Bwa -N 1 -N Options, What They Mean?
bwa
updated 9.3 years ago by
Ashutosh Pandey
12k • written 9.3 years ago by
dfernan
▴ 710
4
votes
4
replies
12k
views
Take A Subset Of A Fastq Paired-End Sample
fastq
illumina
paired-end
reads
rnaseq
rna-seq
updated 9.4 years ago by
Rahul Sharma
▴ 650 • written 9.4 years ago by
dfernan
▴ 710
0
votes
0
replies
2.1k
views
Gtf/Gff File Of Repetitive Elements To Use With Tophat2
gtf
tophat2
9.4 years ago by
dfernan
▴ 710
21
votes
5
replies
3.5k
views
Where Were The Human Genome Reference Samples Taken From?
reference
genome
project
updated 9.5 years ago by
Malachi Griffith
19k • written 9.5 years ago by
dfernan
▴ 710
35
votes
5
replies
23k
views
What Does Cds And Exon Mean In A Gtf File?
gtf
rna-seq
updated 9.5 years ago by
Istvan Albert
94k • written 9.5 years ago by
dfernan
▴ 710
5
votes
6
replies
5.5k
views
How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable For The Tophat Rna-Seq Pipeline?
tophat
sra
geo
bowtie
rna-seq
9.5 years ago by
dfernan
▴ 710
10
votes
5
replies
2.3k
views
Ab5500Xl And Illumina Hiseq
sequencing
hiseq
updated 9.6 years ago by
JC
13k • written 9.6 years ago by
dfernan
▴ 710
14
votes
7
replies
3.5k
views
Random Genomic Regions Of A Given Length Distribution
bed
genome
python
updated 9.8 years ago by
Irsan
★ 7.6k • written 9.8 years ago by
dfernan
▴ 710
6
votes
9
replies
7.9k
views
N Closest Genes To A Given Location
intersect
bedtools
updated 6 months ago by
Ram
36k • written 9.9 years ago by
dfernan
▴ 710
30
votes
20
replies
47k
views
11 follow
List Of All Transcription Factors In Human
transcription
ensembl
genes
updated 9.9 years ago by
Alex Reynolds
34k • written 9.9 years ago by
dfernan
▴ 710
0
votes
4
replies
1.5k
views
Merge Bam File Samtools By Chr End Start Instead Of Chr Start End
bam
samtools
updated 10.1 years ago by
matted
7.6k • written 10.1 years ago by
dfernan
▴ 710
7
votes
10
replies
4.5k
views
Samtools Select Alignments Bitwise Flag Value Of 0 Or 16 Only, Erase Contigs, Add Chr
samtools
filter
10.1 years ago by
dfernan
▴ 710
10
votes
5
replies
5.6k
views
Number Of Reads Over A Given Window And Over Given Regions Bam Files
bam
python
read
updated 10.1 years ago by
brentp
24k • written 10.1 years ago by
dfernan
▴ 710
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