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questions
4
votes
5
replies
14k
views
Take A Subset Of A Fastq Paired-End Sample
paired-end
fastq
rna-seq
illumina
updated 11 months ago by
Ram
43k • written 11.1 years ago by
dfernan
▴ 760
24
votes
9
replies
20k
views
8 follow
Download Geo Tar File Automatically From Linux/Unix
unix
geo
updated 11 months ago by
Bioinfotec
▴ 10 • written 11.3 years ago by
dfernan
▴ 760
9
votes
5
replies
7.7k
views
Genomic Bam To Transcriptome Bam
bam
samtools
updated 7 months ago by
Ram
43k • written 10.4 years ago by
dfernan
▴ 760
5
votes
3
replies
8.3k
views
Liftover Bam File
bam
samtools
liftover
updated 7.7 years ago by
microfuge
★ 1.9k • written 10.6 years ago by
dfernan
▴ 760
10
votes
8
replies
15k
views
Samtools Filter Reads Cigar Field
samtools
cigar
updated 7.9 years ago by
Biostar
20 • written 10.7 years ago by
dfernan
▴ 760
2
votes
9
replies
6.3k
views
Splice-Aware Aligners Versus Genomic Aligners To Transcriptome
alignment
updated 10.0 years ago by
Charles Warden
8.2k • written 10.4 years ago by
dfernan
▴ 760
10
votes
7
replies
8.9k
views
Download Geo Sra Data Using Aspera Connect
ncbi
geo
updated 10.0 years ago by
baikalevi
▴ 10 • written 11.2 years ago by
dfernan
▴ 760
8
votes
4
replies
6.8k
views
Samtools View Of A Sam File Entire Chromosome
samtools
updated 10.2 years ago by
Biostar
20 • written 10.6 years ago by
dfernan
▴ 760
1
vote
4
replies
5.5k
views
Rna-Seq Paired End 76 Bp Read Data From Sra To Fastq To Bam
sra
bam
fastq
updated 10.3 years ago by
Ashutosh Pandey
12k • written 10.3 years ago by
dfernan
▴ 760
16
votes
7
replies
19k
views
Trim/Remove Reads With Adapters From Illumina Rna-Seq Experiment
rnaseq
rna-seq
rna
fastqc
fastq
updated 10.5 years ago by
Istvan Albert
100k • written 10.5 years ago by
dfernan
▴ 760
4
votes
2
replies
5.4k
views
Ensembl And Ucsc Gtfs To Match
gtf
ensembl
ucsc
10.5 years ago by
dfernan
▴ 760
52
votes
22
replies
40k
views
Extract Only Uniquely Mappable Reads From Bam Files
bam
samtools
updated 10.7 years ago by
yifangt
• 0 • written 11.4 years ago by
dfernan
▴ 760
2
votes
2
replies
3.2k
views
Looking For Motif Finding Tools That Work On Broad Peaks
motif
chip-seq
updated 10.7 years ago by
vj
▴ 520 • written 11.4 years ago by
dfernan
▴ 760
1
vote
0
replies
1.7k
views
Snp Density Across Species, And Model Organisms
snp
10.7 years ago by
dfernan
▴ 760
3
votes
3
replies
2.9k
views
Python Check Correct Bam Or Correct Fastq Format
fastq
bam
python
updated 10.8 years ago by
Biostar
20 • written 10.9 years ago by
dfernan
▴ 760
6
votes
5
replies
5.0k
views
Known Snps For C57Bl/6 And Cast/Eij
snp
dbsnp
updated 11.0 years ago by
Larry_Parnell
16k • written 11.0 years ago by
dfernan
▴ 760
2
votes
4
replies
13k
views
Samtools Count Paired-End Reads
paired-end
samtools
tophat
11.0 years ago by
dfernan
▴ 760
5
votes
5
replies
6.4k
views
Bwa -N 1 -N Options, What They Mean?
bwa
updated 11.0 years ago by
Ashutosh Pandey
12k • written 11.0 years ago by
dfernan
▴ 760
0
votes
0
replies
2.4k
views
Gtf/Gff File Of Repetitive Elements To Use With Tophat2
gtf
tophat2
11.1 years ago by
dfernan
▴ 760
21
votes
5
replies
4.3k
views
Where Were The Human Genome Reference Samples Taken From?
reference
genome
project
updated 11.2 years ago by
Malachi Griffith
19k • written 11.2 years ago by
dfernan
▴ 760
35
votes
5
replies
27k
views
What Does Cds And Exon Mean In A Gtf File?
gtf
rna-seq
updated 11.2 years ago by
Istvan Albert
100k • written 11.2 years ago by
dfernan
▴ 760
5
votes
6
replies
6.0k
views
How To Transform The Colorspace Data Obtained From Sra Into A Format Suitable For The Tophat Rna-Seq Pipeline?
tophat
sra
geo
bowtie
rna-seq
11.2 years ago by
dfernan
▴ 760
10
votes
5
replies
2.7k
views
Ab5500Xl And Illumina Hiseq
sequencing
hiseq
updated 11.3 years ago by
JC
13k • written 11.3 years ago by
dfernan
▴ 760
14
votes
7
replies
4.1k
views
Random Genomic Regions Of A Given Length Distribution
bed
genome
python
updated 11.5 years ago by
Irsan
★ 7.8k • written 11.5 years ago by
dfernan
▴ 760
7
votes
9
replies
9.2k
views
N Closest Genes To A Given Location
intersect
bedtools
updated 2.2 years ago by
Ram
43k • written 11.6 years ago by
dfernan
▴ 760
30
votes
20
replies
51k
views
11 follow
List Of All Transcription Factors In Human
transcription
ensembl
genes
updated 11.6 years ago by
Alex Reynolds
35k • written 11.6 years ago by
dfernan
▴ 760
0
votes
4
replies
1.8k
views
Merge Bam File Samtools By Chr End Start Instead Of Chr Start End
bam
samtools
updated 11.8 years ago by
matted
7.8k • written 11.8 years ago by
dfernan
▴ 760
7
votes
10
replies
5.6k
views
Samtools Select Alignments Bitwise Flag Value Of 0 Or 16 Only, Erase Contigs, Add Chr
samtools
filter
11.8 years ago by
dfernan
▴ 760
10
votes
5
replies
6.3k
views
Number Of Reads Over A Given Window And Over Given Regions Bam Files
bam
python
read
updated 11.8 years ago by
brentp
24k • written 11.8 years ago by
dfernan
▴ 760
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