User: gustavojorge080
gustavojorge080 • 0
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Posts by gustavojorge080
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... Hello people.
I am using the Mira assembler in some iontorrent readings. Everything was going well, but suddenly the program stopped mounting the readings correctly.
Example: I used the program to read "A" and it was executed. All right. So I went to assemble reading "B", but it didn't perform. Th ...
written 4 days ago by
gustavojorge080 • 0
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... Hello people.
I am using Mira assembler, however, I want to run it with kmer values 21, 31, 55, 77, 99 and 127.
Is there any way to run everything simultaneously? How does it happen with SPAdes?
Thank you very much in advance!
...
written 10 days ago by
gustavojorge080 • 0
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... Oh I see. Thanks for answer :) ...
written 10 days ago by
gustavojorge080 • 0
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... Hello people.
I am using Ray assembler, however, I want to run it with kmer values 21, 31, 55, 77, 99 and 127.
Is there any way to run everything simultaneously? How does it happen with SPAdes?
Thank you very much in advance! ...
written 17 days ago by
gustavojorge080 • 0
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... Which of the following formats is most similar to Ion Torrent readings?
454
IIlumina
PacBio
Any answer will be welcome! ...
written 10 weeks ago by
gustavojorge080 • 0
• updated
10 weeks ago by
h.mon ♦ 27k
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Comment:
C: Ray assembly on only one computer
... Ah yes, I understood, thank you for answering and helping me. ...
written 11 weeks ago by
gustavojorge080 • 0
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Comment:
C: Ray assembly on only one computer
... Hello, thank you for replying.
I'm using Ray for some tests and I know it's old. It is installed correctly.
When I run the assembly with only "Ray" and the parameters it works normally. However, I wonder if this is the correct way to run it or if I should use "mpiexec -n 80" before "Ray". ...
written 11 weeks ago by
gustavojorge080 • 0
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... Hello guys
I'd like to run an assembly with Ray
This program is parallel and allows to run on more than one computer, but I want to run it on my own only. The manual suggests running it as follows:
mpiexec -n 80 Ray
However, the manual does not explain how the above command works. I think this c ...
written 11 weeks ago by
gustavojorge080 • 0
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Comment:
C: Mira assembler with IonTorrent
... This is the error that appears:
Fatal error (may be due to problems of the input data or parameters):
********************************************************************************
* Problems found with the template data, see output log for more info. This points some serious problem either wit ...
written 3 months ago by
gustavojorge080 • 0
• updated
12 weeks ago by
h.mon ♦ 27k
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... Hello everyone!
I am new to the world of assembling genomes and would like to run the Mira with IonTorrent unpaired reads. But assembly results in empty files.
The first step is to create a manifest file and then run:
mira manifest.conf> & log_assembly.txt
Below is the manifest file:
...
written 3 months ago by
gustavojorge080 • 0
• updated
12 weeks ago by
Kevin • 630
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