User: gustavojorge080

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Posts by gustavojorge080

<prev • 29 results • page 2 of 3 • next >
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Question about Mira parameters
... Hello people. I am using the Mira assembler in some iontorrent readings. What is the difference between the min_length and minimum_read_length parameters in the MIRA assembler? ...
assembly mira iontorrent ion written 11 months ago by gustavojorge0800 • updated 11 months ago by gayachit200
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Mira assembler with IonTorrent
... Hello people. I am using the assembler Mira in some iontorrent readings. Did anyone else use it? The assemblies are being completed, however, I want to know how to improve the performance of the process. In the MIRA manual, there are MANY parameters; therefore, if anyone knows which ones are best ...
assembly mira ion iontorrent manifest written 11 months ago by gustavojorge0800 • updated 11 months ago by h.mon32k
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Mira assembler has stopped working
... Hello people. I am using the Mira assembler in some iontorrent readings. Everything was going well, but suddenly the program stopped mounting the readings correctly. Example: I used the program to read "A" and it was executed. All right. So I went to assemble reading "B", but it didn't perform. Th ...
genome assembly mira bug iontorrent written 17 months ago by gustavojorge0800
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Comment: C: Run Ray Assembler with multiple kmer values
... Oh I see. Thanks for answer :) ...
written 18 months ago by gustavojorge0800
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Run Ray Assembler with multiple kmer values
... Hello people. I am using Ray assembler, however, I want to run it with kmer values 21, 31, 55, 77, 99 and 127. Is there any way to run everything simultaneously? How does it happen with SPAdes? Thank you very much in advance! ...
genome assembly ray spades gene written 18 months ago by gustavojorge0800
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Ion Torrent vs 454, Illumina and Pacbio reads
... Which of the following formats is most similar to Ion Torrent readings? 454 IIlumina PacBio Any answer will be welcome! ...
ion torrent illumina 454 ion pacbio written 20 months ago by gustavojorge0800 • updated 20 months ago by h.mon32k
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Comment: C: Ray assembly on only one computer
... Ah yes, I understood, thank you for answering and helping me. ...
written 20 months ago by gustavojorge0800
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Comment: C: Ray assembly on only one computer
... Hello, thank you for replying. I'm using Ray for some tests and I know it's old. It is installed correctly. When I run the assembly with only "Ray" and the parameters it works normally. However, I wonder if this is the correct way to run it or if I should use "mpiexec -n 80" before "Ray". ...
written 20 months ago by gustavojorge0800
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Ray assembly on only one computer
... Hello guys I'd like to run an assembly with Ray This program is parallel and allows to run on more than one computer, but I want to run it on my own only. The manual suggests running it as follows: mpiexec -n 80 Ray However, the manual does not explain how the above command works. I think this c ...
assembly ray written 20 months ago by gustavojorge0800
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Comment: C: Mira assembler with IonTorrent
... This is the error that appears: Fatal error (may be due to problems of the input data or parameters): ******************************************************************************** * Problems found with the template data, see output log for more info. This points some serious problem either wit ...
written 20 months ago by gustavojorge0800 • updated 20 months ago by h.mon32k

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