User: shzhang

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shzhang10
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Posts by shzhang

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Comment: C: Retrieve Go Terms Using Uniprot Blasts Results (Together W/ Gene_Association.Goa
... Hi Andre, thanks for your reply. The script is very useful to split blast xml results. Maybe I didn't express my question clearly. I'm wondering what's the relationship between this script and retrieve GO ids from gene_association.goa_uniprot.gz dataset? I tried Blast2GO, it's so slow. So I'd like ...
written 6.8 years ago by shzhang10
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Retrieve Go Terms Using Uniprot Blasts Results (Together W/ Gene_Association.Goa_Uniprot.Gz)
... Hi all! I got some differential expressed (DE) genes from a non-model RNA-seq project and I'd like to assign some GO ids to some of these DE genes. I ran a blastx search of these DE genes against UniProtKB/Swiss-Prot using a cut-off E-value of 1e-5, and retained one best match (-max_target_seqs ...
uniprot go written 6.8 years ago by shzhang10 • updated 5.0 years ago by Biostar ♦♦ 20

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