User: caro-ca

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caro-ca0
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Posts by caro-ca

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Comment: C: Software testing process failure: How can I match the already installed programs
... THank you so much for your help!! It worked!! ...
written 9 days ago by caro-ca0
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Comment: C: Software testing process failure: How can I match the already installed programs
... @genomax I installed tepid through bioconda and this is the error message: (base) silviav@wildtype1:~:tepid-discover Traceback (most recent call last): File "/home/silviav/anaconda2/bin/tepid-discover", line 7, in from tepid import tepid File "/home/silviav/anaconda2/l ...
written 9 days ago by caro-ca0
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Comment: C: Software testing process failure: How can I match the already installed programs
... Dear @genomax, I don't know how to validate/close this question. It cannot find the green mark on the left. ...
written 10 days ago by caro-ca0
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Comment: C: How can I uncompress specific files in a loop and use them in another code and c
... Perfect! Thank you for clarifying. ...
written 10 days ago by caro-ca0
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Comment: C: How can I uncompress specific files in a loop and use them in another code and c
... Perfect, I will have a look at the STDIN (sys.stdin) as I am not familiar with it. Additionally, the software can look at TEs on fastq paired-end sequencing reads and not assemblies. Thank you for your help. ...
written 11 days ago by caro-ca0
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Comment: C: How can I uncompress specific files in a loop and use them in another code and c
... I cannot find the green mark on the left. How does it look? ...
written 11 days ago by caro-ca0
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How can I uncompress specific files in a loop and use them in another code and compress them again?
... Hi! I am trying to run a transposable detection software called McClintock on paired-end Illumina reads. For this step, I created a Python script to loop over the files in my directory and select the proper pair of reads. However, I am dealing with a significant amount of data. For this reason, I co ...
python written 11 days ago by caro-ca0
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Comment: C: Software testing process failure: How can I match the already installed programs
... Thank you so much! I thought TEPID didn't have bioconda to install. ...
written 13 days ago by caro-ca0
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Comment: C: Software testing process failure: How can I match the already installed programs
... I already edited the title, hope it is informative enough, even though it was hard for me to find the accurate one. The file also exists: (base) silviav@wildtype1:~/TEPID:ls -l /home/silviav/.local/lib/python2.7/site-packages/pybedtools/cbedtools.so -rwxr-xr-x 1 silviav binf 2410168 Mar ...
written 13 days ago by caro-ca0
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Software testing process failure: How can I match the already installed programs with the testing data?
... Hi! I am running a software that detects transposons in a model organism, [Tepid][1]. Unfortunately TEPID doesn't offer user support. For this reason, I decided to post the issue here wondering if someone is familiar with the error message. (base) silviav@wildtype1:~/TEPID:python setup.py te ...
pybedtools anaconda2 written 13 days ago by caro-ca0

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