User: chaudharyc61

gravatar for chaudharyc61
Reputation:
0
Status:
New User
Last seen:
11 hours ago
Joined:
2 months, 3 weeks ago
Email:
c***********@gmail.com

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by chaudharyc61

<prev • 17 results • page 2 of 2 • next >
2
votes
1
answer
118
views
1
answer
MACS2 result of FDR
... Hello everyone As one of the output file of macs2 is in excel form which tells -log10(q-value) which is the FDR (False Discover Rate) I wan to ask whether the highest q-value is reliable or the lowest as every peak has its own -log10(q-value) In other words if -log10(q-value) is 10.08 of one peak is ...
false discovery rate macs2 chip-seq q-value written 8 weeks ago by chaudharyc610 • updated 8 weeks ago by genomax70k
0
votes
1
answer
135
views
1
answers
Comment: C: Peak calling using spp package
... While calling peak it is creating problem I am using spp package for peak calling and it is not giving binding characterstics ...
written 9 weeks ago by chaudharyc610
1
vote
1
answer
135
views
1
answer
Peak calling using spp package
... Hello everyone I'm using spp package for Chip-seq data so while reading the bam files, the data is showing three elements 1. tags, 2. flen and 3. quality What is flen ? ...
peak calling chip-seq spp package written 9 weeks ago by chaudharyc610 • updated 9 weeks ago by Devon Ryan91k
0
votes
0
answers
125
views
0
answers
Error in peak calling using SPP package
... Hello everyone I am using spp package for finding the peaks in my Chip-seq data Problem is in the package there's a function find.binding.positions(), in which there are two methods WTD method and MTC method First i have no idea what theses methods means and second i have tried both of these met ...
peak calling chip-seq spp written 10 weeks ago by chaudharyc610
0
votes
0
answers
147
views
0
answers
MACS2 result analysis
... Hello everyone, I have done the Peak calling step using MACS2 algorithm using command line. I'm trying to understand the result but not able to using IGV tool. Please help and also I wants to understand what sort of result all the files contains. Thank you. ...
peak calling macs2 chip-seq tool written 11 weeks ago by chaudharyc610 • updated 11 weeks ago by ATpoint21k
0
votes
0
answers
156
views
0
answers
Comment: C: Bowtie2 Alignment Error
... I just filtered my read files based on quality score; because of that the number of reads in both files (Read 1 and Read2) are not same. This is the full command I'm using: bowtie2 -x Arth_Test -1 R1_filtered_trimmed.fastq -2 R2_filtered_trimmed.fastq --local --very-sensitive-local --un Unpaired_No ...
written 12 weeks ago by chaudharyc610
2
votes
0
answers
156
views
0
answers
Bowtie2 Alignment Error
... Hi I'm aligning Paired-end data using `bowtie2` aligner and got this error: Error, fewer reads in file specified with -2 than in file specified with -1 terminate called after throwing an instance of 'int' Aborted (core dumped) (ERR): bowtie2-align exited with value 134 In `bowtie2` ...
bowtie2 written 12 weeks ago by chaudharyc610 • updated 12 weeks ago by ATpoint21k

Latest awards to chaudharyc61

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1657 users visited in the last hour