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answers
2
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349
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Answer:
Answer: change order of violin plots in ggplot2
updated 8 days ago by
Ram
43k • written 8 days ago by
fracarb8
★ 1.5k
1
vote
1
reply
342
views
Answer:
Answer: Subsetting Seurat object based on list of cell barcodes
9 days ago by
fracarb8
★ 1.5k
0
votes
0
replies
483
views
Answer:
Answer: ArchR Doublet Inference to Signac
9 days ago by
fracarb8
★ 1.5k
3
votes
0
replies
230
views
Answer:
Answer: Doplot to display 2 metadata variables
13 days ago by
fracarb8
★ 1.5k
0
votes
0
replies
198
views
Answer:
Answer: Error in changing the annotation color of pheatmap
16 days ago by
fracarb8
★ 1.5k
0
votes
0
replies
561
views
Answer:
Answer: Downsampling of cells in scRNAseq DE analysis
27 days ago by
fracarb8
★ 1.5k
1
vote
0
replies
215
views
Answer:
Answer: getting error when transfer labels for my scRNAseq data using FindTransferAnchor
28 days ago by
fracarb8
★ 1.5k
0
votes
0
replies
226
views
Answer:
Answer: Speed up FindClusters execution?
4 weeks ago by
fracarb8
★ 1.5k
1
vote
1
reply
865
views
Answer:
Answer: JoinLayers to find markers in merged or integrated analysis in seurat
6 weeks ago by
fracarb8
★ 1.5k
0
votes
0
replies
540
views
Answer:
Answer: Monocle3 gene expression dot plot with a cell data set object (need help with re
11 weeks ago by
fracarb8
★ 1.5k
2
votes
1
reply
389
views
Answer:
Answer: convert dataframe R
3 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
1.6k
views
Answer:
Answer: DoubletFinder for Python?
4 months ago by
fracarb8
★ 1.5k
2
votes
0
replies
757
views
Answer:
Answer: How to 'organize' multiple umap/genes generates with Seurat `FeaturePlot`in a sp
5 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
374
views
Answer:
Answer: seurat-creating heatmaps
5 months ago by
fracarb8
★ 1.5k
2
votes
1
reply
1.1k
views
Answer:
Answer: Bioinformatics software for single cell omics
5 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
1.9k
views
Answer:
Answer: Code for reading h5ad files in R
5 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
570
views
Answer:
Answer: How to get ncol = nrow?
updated 5 months ago by
Ram
43k • written 5 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
1.2k
views
Answer:
Answer: Is there an easy to modify the subplot titles in DimPlot (Seurat)?
updated 6 months ago by
Ram
43k • written 6 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
667
views
Answer:
Answer: Add samples IDs to Seurat object when integrating different samples to do differ
updated 6 months ago by
Ram
43k • written 6 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
1.2k
views
Answer:
Answer: How do I install DSSP?
6 months ago by
fracarb8
★ 1.5k
2
votes
2
replies
1.1k
views
Answer:
Answer: Selecting MOUSE gene set libraries in Enrichr
6 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
595
views
Answer:
Answer: UMAP graph using DimPlot pre/post integration
6 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
1.4k
views
Answer:
Answer: Negative Expression in RNA Assay on Dot Plot After SCT Transform
7 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
2.1k
views
Answer:
Answer: InferCNV results interpretation
7 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
886
views
Answer:
Answer: Can I using scVI to integrate data, then using R to conduct following analysis?
7 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
1.3k
views
Answer:
Answer: Change transparency/alpha in seurat's vlnPlot()
7 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
506
views
Answer:
Answer: HeatMap, R, Rownames
8 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
741
views
Answer:
Answer: How to obtain cell-cell interaction list
8 months ago by
fracarb8
★ 1.5k
5
votes
1
reply
2.1k
views
Answer:
Answer: In Scanpy, how to RDS file and merge it with other Scanpy objects.
8 months ago by
fracarb8
★ 1.5k
7
votes
0
replies
4.7k
views
Answer:
Answer: Convert Human to Mouse Symbols
9 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
729
views
Answer:
Answer: Uploading 10x Data into R for Monocle 3
9 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
665
views
Answer:
Answer: What kind of statistical test does Cellranger count use?
9 months ago by
fracarb8
★ 1.5k
2
votes
0
replies
3.6k
views
Answer:
Answer: Seurat 'DoHeatmap()' hierarchical clustering
10 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
18k
views
Answer:
Answer: How to get subset of a Seurat object based on metadata?
12 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
1.1k
views
Answer:
Answer: Getting unspliced counts for scRNA-seq data generated from cellranger aggr pipel
12 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
1.9k
views
Answer:
Answer: How to solve a possible memory issues with Seurat and IntegrateData step?
13 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
624
views
Answer:
Answer: exchange the monocle data with Seurat
13 months ago by
fracarb8
★ 1.5k
2
votes
1
reply
784
views
Answer:
Answer: bash script error to copy files from multiple directories to one directory
15 months ago by
fracarb8
★ 1.5k
1
vote
0
replies
533
views
Answer:
Answer: Extract Monocle2 "State" for Seurat
16 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
1.5k
views
Answer:
Answer: Tuning seurat integration strength to prevent overcorrection
18 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
681
views
Answer:
Answer: What is the best way to process a metadata file that SEURAT can read?
19 months ago by
fracarb8
★ 1.5k
1
vote
1
reply
2.9k
views
Answer:
Answer: SCTransform and differential gene expression
19 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
900
views
Answer:
Answer: Clustered, annotated dotplot to scRNA-Seq data
21 months ago by
fracarb8
★ 1.5k
1
vote
1
reply
1.7k
views
Answer:
Answer: ESTIMATE tumor purity
21 months ago by
fracarb8
★ 1.5k
1
vote
1
reply
2.6k
views
Answer:
Answer: What to do with Seurat metadata and counts in separate text files?
22 months ago by
fracarb8
★ 1.5k
0
votes
1
reply
1.0k
views
Answer:
Answer: How to add Ensembl id to cluster.markers in Seurat
22 months ago by
fracarb8
★ 1.5k
2
votes
0
replies
998
views
Answer:
Answer: Error on R shiny app metaOmics; object %AND% not found
22 months ago by
fracarb8
★ 1.5k
0
votes
0
replies
1.6k
views
Answer:
Answer: Automatic rename of filenames with bash script
22 months ago by
fracarb8
★ 1.5k
1
vote
1
reply
1.8k
views
Answer:
Answer: Normalization of RNASeq counts with a reference gene (/genes)
22 months ago by
fracarb8
★ 1.5k
3
votes
1
reply
871
views
Answer:
Answer: use gene symbol in heatmap instead of ensemble geneID
23 months ago by
fracarb8
★ 1.5k
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