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532
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How to obtain Node/ Edge information from a Reactome Pathway
R API pathways reactome databases
updated 5 months ago by 145k • written 6 months ago by ▴ 150
0
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0
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532
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Comment: Comment: How to obtain Node/ Edge information from a Reactome Pathway
6 months ago by K.patel5 ▴ 150
0
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0
replies
425
views
How to read count information from an old RGB based Agilent DNA array
CNV Agilent DNA WGS
13 months ago by K.patel5 ▴ 150
1
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0
replies
380
views
Can ART be used to generate a WES .sam file rather than a WGS file?
genomics biology WGS synthetic WES
22 months ago by K.patel5 ▴ 150
1
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5
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956
views
Advice on how to generate synthetic Copy Number Variation data
CNV genomics biology synthetic WES
updated 23 months ago by ▴ 280 • written 23 months ago by ▴ 150
0
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0
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956
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Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
23 months ago by K.patel5 ▴ 150
0
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1
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956
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Comment: Comment: Advice on how to generate synthetic Copy Number Variation data
23 months ago by K.patel5 ▴ 150
0
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0
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1.4k
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Comment: Comment: How to add transcript and cpg site information to a bed file
23 months ago by K.patel5 ▴ 150
0
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0
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1.4k
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Comment: Comment: How to add transcript and cpg site information to a bed file
23 months ago by K.patel5 ▴ 150
0
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1
reply
1.1k
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VEP/ CADD error - ERROR: Assembly is GRCh38 but CADD file does not contain GRCh38 in header.
CADD trio WES VEP
updated 16 months ago by ▴ 710 • written 2.1 years ago by ▴ 150
0
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1
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1.3k
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Comment: Comment: Plot GSEA software results into R
2.4 years ago by K.patel5 ▴ 150
0
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0
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487
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Comment: Comment: Dataset or repository to look for RNA seq datasets using ribosomal depletion for
2.4 years ago by K.patel5 ▴ 150
3
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4
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1.4k
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How to add transcript and cpg site information to a bed file
genomics annotations cpg BED
23 months ago by K.patel5 ▴ 150
0
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0
replies
1.8k
views
Comment: Comment: How to pipe bcftools query to bcftools fill-tags
2.5 years ago by K.patel5 ▴ 150
2
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2
replies
1.8k
views
How to pipe bcftools query to bcftools fill-tags
BCFtools variant-calling genomics
updated 15 months ago by 44k • written 2.5 years ago by ▴ 150
0
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0
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521
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Comment: Comment: miRNA-lncRNA interaction prediction
2.6 years ago by K.patel5 ▴ 150
0
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0
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904
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Comment: Comment: RNAseq and future analysis
2.6 years ago by K.patel5 ▴ 150
0
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0
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1.1k
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Comment: Comment: How to use BCFtools to keep variants if they are `DP > 10` in all samples?
2.6 years ago by K.patel5 ▴ 150
4
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3
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1.1k
views
How to use BCFtools to keep variants if they are `DP > 10` in all samples?
BCFtools variant-calling genomics
updated 15 months ago by 44k • written 2.6 years ago by ▴ 150
0
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1
reply
1.9k
views
Comment: Comment: Transcription factors database
2.6 years ago by K.patel5 ▴ 150
1
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0
replies
1.1k
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Comment: Comment: Network Analysis - how to generate the edges and vertices dataset?
2.6 years ago by K.patel5 ▴ 150
0
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1
reply
2.5k
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Comment: Comment: Biomart getLDS between two plant genomes does not work
2.6 years ago by K.patel5 ▴ 150
2
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0
replies
2.9k
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Answer: Answer: Binary heatmap using R
2.6 years ago by K.patel5 ▴ 150
0
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1
reply
2.9k
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Comment: Comment: Heatmap R
2.6 years ago by K.patel5 ▴ 150
1
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1
reply
2.3k
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Comment: Comment: GATK4 - To be known or not to be known, that is the question.
2.6 years ago by K.patel5 ▴ 150
7
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3
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2.3k
views
GATK4 - To be known or not to be known, that is the question.
WGS WES flags GATK
updated 2.6 years ago by 5.8k • written 2.6 years ago by ▴ 150
0
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0
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1.6k
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Comment: Comment: GATK4 -known-sites input Recalibrate Base Quality Scores
2.6 years ago by K.patel5 ▴ 150
2
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3
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2.1k
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VEP - How to retrieve information from the INFO column of a vcf file neatly
tab vcf annotations VEP
updated 2.6 years ago by 12k • written 2.7 years ago by ▴ 150
0
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0
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2.1k
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Comment: Comment: VEP - How to retrieve information from the INFO column of a vcf file neatly
2.7 years ago by K.patel5 ▴ 150
0
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0
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1.6k
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Comment: Comment: Strangely too low P-value and Adjusted P-value(FDR) DESeq2 and edgeR
2.7 years ago by K.patel5 ▴ 150
0
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0
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4.5k
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Comment: Comment: How to create specific .bed files for a panel of genes
2.7 years ago by K.patel5 ▴ 150
0
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0
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4.5k
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Comment: Comment: How to create specific .bed files for a panel of genes
2.7 years ago by K.patel5 ▴ 150
7
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4
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4.5k
views
How to create specific .bed files for a panel of genes
panel genomics BED
2.7 years ago by K.patel5 ▴ 150
0
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0
replies
2.1k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
2.8 years ago by K.patel5 ▴ 150
0
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1
reply
2.1k
views
Comment: Comment: Attempting to generate a bam.bai file but the output is not readable
2.8 years ago by K.patel5 ▴ 150
4
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4
replies
2.1k
views
Attempting to generate a bam.bai file but the output is not readable
exome samtools sequencing BAM
2.8 years ago by K.patel5 ▴ 150
3
votes
2
replies
1.1k
views
Is it necessary to test for multiple correction during differential expression analysis on microRNA data?
microRNA miRNA-seq differential expression stats
updated 3.6 years ago by 8.8k • written 3.6 years ago by ▴ 150
0
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1
reply
2.5k
views
Comment: C: How does miRdeep2 normalise sequences
3.7 years ago by K.patel5 ▴ 150
5
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6
replies
2.5k
views
How does miRdeep2 normalise sequences
miRNA sequencing miRDeep2
updated 3.1 years ago by ▴ 10 • written 3.7 years ago by ▴ 150
0
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0
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3.5k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
4.6 years ago by K.patel5 ▴ 150
0
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1
reply
3.5k
views
Comment: C: Why do some gene set enrichment services do not ask for a background data set
4.6 years ago by K.patel5 ▴ 150
5
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4
replies
3.5k
views
Why do some gene set enrichment services do not ask for a background data set
enrichr panther GOrilla GSEA
4.6 years ago by K.patel5 ▴ 150
0
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0
replies
1.7k
views
Comment: C: Processing .raw files or out.tar files from Mass Spec
5.2 years ago by K.patel5 ▴ 150
1
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2
replies
1.7k
views
Processing .raw files or out.tar files from Mass Spec
mass spec R proteomics
5.2 years ago by K.patel5 ▴ 150
0
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1
reply
1.8k
views
Comment: C: fastq dump usage of microRNA-seq data
5.3 years ago by K.patel5 ▴ 150
0
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0
replies
1.8k
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Comment: C: fastq dump usage of microRNA-seq data
5.3 years ago by K.patel5 ▴ 150
0
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0
replies
1.8k
views
Comment: C: fastq dump usage of microRNA-seq data
5.3 years ago by K.patel5 ▴ 150
7
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8
replies
1.8k
views
fastq dump usage of microRNA-seq data
RNA-Seq microRNA fastq
5.3 years ago by K.patel5 ▴ 150
8
votes
2
replies
3.5k
views
Removing low level expression genes from microarray experiments
next-gen microarray
updated 5.3 years ago by 35k • written 5.3 years ago by ▴ 150
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