User: SpamChop

gravatar for SpamChop
SpamChop10
Reputation:
10
Status:
New User
Location:
Edinburgh, UK
Last seen:
10 months, 2 weeks ago
Joined:
11 months, 3 weeks ago
Email:
n*********@gmail.com

Posts by SpamChop

<prev • 5 results • page 1 of 1 • next >
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Comment: C: using wnd charm
... Install location (most probably): downloads/wnd-charm-master and images are taken from desktop/cho ...
written 11 months ago by SpamChop10
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Comment: C: using wnd charm
... The GitHub page just gave the installation instructions. I dont know what to do now. I have tried basic some commands like: wndcharm train desktop/cho feature_file It says 'wndcharm' command not found. I could not find a proper implementation of wnd-charm :(. Thanks! ...
written 11 months ago by SpamChop10
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using wnd charm
... Hi! I have just installed wnd-charm on my mac and I am struggling with implementing it on some test images. In short: I dont know where/how to start. Anybody who has previous experience with wnd-charm or similar tool, please help! Thanks! ...
image analysis microscopy terminal wnd-charm written 11 months ago by SpamChop10
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Viewing alignment from SAM/MAF/PSL files
... Hi! I have an alignment file in different formats namely, SAM, MAF, PSL. These files contains data in the form of contigs mapping start and end position on chromosome, the chromosome number and score. Is there any tool for the easy visualization of this data, as in, contigs overlapping with the re ...
genome assembly alignment written 11 months ago by SpamChop10 • updated 11 months ago by h.mon29k
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Mapping contigs to a reference genome
... Hi! I have ~163000 contigs (a single FASTA file) and I want to map them to a refernce genome (also a FASTA file). Is there any way to do it? I have tried bowtie2, but could not work out its nuances. Any help appreciated! Thanks ...
genome alignment written 11 months ago by SpamChop10 • updated 11 months ago by evelyn90

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