User: jturner2

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jturner20
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Posts by jturner2

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Comment: C: Local Blast Discrepancies
... I downloaded the nr_v5 database from the ftp site found here: ftp://ftp.ncbi.nlm.nih.gov/blast/db/v5/, but I will re-download and try again. Thanks for running that test. Edit: After a clean nr_v5 install, the issue has been resolved, thank you to everyone who answered this post. ...
written 6 days ago by jturner20
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Comment: C: Local Blast Discrepancies
... Thanks for the quick reply. I have completely removed the option from my local blast command, but I still got identical results to when it was there, which is incredibly confusing. ...
written 6 days ago by jturner20
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Comment: C: Local Blast Discrepancies
... I have looked around biostars, and most of what I found was differences in the word size or a difference in the open and extend gap costs. As for the max target seqs, the webpage defaults to 100 results, does it do this in a different manner than the local version? ...
written 6 days ago by jturner20
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Comment: C: Local Blast Discrepancies
... I have added that to the post. ...
written 6 days ago by jturner20
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Local Blast Discrepancies
... I am attempting to setup a local BLAST environment , and was doing some test queries on both the local blast environment and the online web server, when I noticed some dramatic discrepancies. On both the web server and the local blast I was using word size 3, gap open 11, gap extend 1, an e-value th ...
blast written 6 days ago by jturner20

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