User: las996

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las9960
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Posts by las996

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Comment: C: SPADES contig output
... I'll try to contact them, thank you. ...
written 8 hours ago by las9960
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Comment: C: Not-Merged Reads What to do?
... Align them against reference genome, with Diamond, and then build contigs with the reads, using SPAdes. I'm not sure if it works to treat them all as single end ...
written 8 hours ago by las9960
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Not-Merged Reads What to do?
... Hey guys, So I'm working with pair-end data and I'm concerning regarding the merged/not-merged reads. I'm currently merging them using PEAR and QIIME 2, but I would not like to discard those not merged reads. Should I treat them as "single-end"-like reads? Or it is best to discard them? I'm worried ...
assembly written 9 hours ago by las9960 • updated 7 hours ago by gb780
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SPADES contig output
... Hi everyone, I'm using SPAdes 3.12 to assemble contigs using reads. The question is, is there any way to retrieve the reads used to assemble the contigs without a further alignment step? I believe that if SPAdes build the contigs using the reads it must containg this information somewhere I could no ...
assembly written 5 days ago by las9960 • updated 3 days ago by h.mon26k

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