User: jongyun.jung

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jongyun.jung10
Reputation:
10
Status:
New User
Location:
USA
Website:
http://jystatistics.gi...
Twitter:
jungjongyun83
Last seen:
1 week, 3 days ago
Joined:
2 months, 1 week ago
Email:
j***********@unlv.edu

I'm currently pursuing Ph.D in Biostatistics at University of Nevada, Las Vegas. I'm interested in deep learning, machine learning, data mining and mathematics!

Posts by jongyun.jung

<prev • 5 results • page 1 of 1 • next >
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Comment: C: PLINK --update-name command error due to multiple SNPs with same chr:pos but dif
... Hi, I have exactly same problem now. I was wondering, have you figured out this problem to remove the duplicate variant ID? Thank you. ...
written 4 weeks ago by jongyun.jung10
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Comment: C: Converting SNP from chr:pos to rs number using PLINK?
... Hi, I'm kind of facing similar error of duplicate variant ID after using --update-name flag in plink. My error is shown below. Error: Duplicate variant ID '1:100002443' in --update-name file. When you are saying for the possible solution of 1) Do not update any SNP with two ore more possible rs. ...
written 4 weeks ago by jongyun.jung10
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Comment: C: Removing SNPs with the count allele in 5 (insertion), 6 (deletion) or 7(allele f
... Thank you for your help! ...
written 4 weeks ago by jongyun.jung10
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Removing SNPs with the count allele in 5 (insertion), 6 (deletion) or 7(allele from a reference panel)
... Hi, I have imputed data and renamed the integers allele to the letters by using the plink falg of "allele 1234". However, I have noticed that there are 5 (insertion), 6 (deletion) or 7(allele from a reference panel) not changing to the letters. Can anyone know how to delete this SNPs in plink o ...
gwas imputation plink snp unix written 4 weeks ago by jongyun.jung10 • updated 4 weeks ago by Pierre Lindenbaum122k
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convert .dose.gz and .info.gz files to plink binary format (.bim, .fam, .bed)
... I have imputed data in the format of zipped as filename.dose.gz and info.gz. ***1) I was wondering, how can I convert these files to plink binary format?*** I used the software of dose2plink and then converted to .pfam and .pdat.gz files. However, I cannot figure out how to convert plink binary f ...
dose imputation plink info written 5 weeks ago by jongyun.jung10

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