User: akansha.gitanjali

Reputation:
10
Status:
New User
Location:
Last seen:
2 weeks, 6 days ago
Joined:
1 year, 1 month ago
Email:
a****************@gmail.com

Posts by akansha.gitanjali

<prev • 12 results • page 1 of 2 • next >
0
votes
1
answer
93
views
1
answer
ClusterProfiler: enrichDGN failing to map gene ID
... I was trying to perform the functional enrichment analysis of my proteomics data using enrichDGN. (https://yulab-smu.github.io/clusterProfiler-book/chapter12.html#bar-plot) I converted my Uniprot id’s to Entrez id’s using `entrez<-mapIds(org.Mm.eg.db, genesymbol, 'ENTREZID', 'SYMBOL', multiVals=" ...
R clusterprofiler written 28 days ago by akansha.gitanjali10 • updated 28 days ago by antonioggsousa910
0
votes
3
answers
3.2k
views
3
answers
Comment: C: 98.21% of input gene IDs are fail to map
... Hi Kevin, When I used just as you showed above I get an error message: > Error in getBM(mart = mart, attributes = c("external_gene_name", > "entrezgene"), : > Invalid attribute(s): entrezgene > Please use the function 'listAttributes' to get valid attribute names Why is i ...
written 28 days ago by akansha.gitanjali10
1
vote
1
answer
210
views
5 follow
1
answer
Extract text between delimiters and use it to rename the same file
... I have file that looks like >sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens OX=9606 GN=UBR4 PE=1 SV=1 362 S AGC AQQVRTGSTSSKEDD 2.108 0.386 364 S AGC QVRTGSTSSKEDDYE 0.556 0.386 555 S AGC LQRQRKGSMSSDASA 4.466 0.386 625 S AGC ESSPRVKSPSKQ ...
linux shell bash written 8 months ago by akansha.gitanjali10 • updated 8 months ago by RamRS28k
0
votes
2
answers
247
views
2
answers
Comment: C: How to separate a big file into smaller ones using linux commands?
... I have another question: I have file that looks like >sp|Q5T4S7|UBR4_HUMAN E3 ubiquitin-protein ligase UBR4 OS=Homo sapiens OX=9606 GN=UBR4 PE=1 SV=1 362 S AGC AQQVRTGSTSSKEDD 2.108 0.386 364 S AGC QVRTGSTSSKEDDYE 0.556 0.386 555 S AGC LQRQRKGSMSSDASA 4.466 0.386 ...
written 8 months ago by akansha.gitanjali10 • updated 8 months ago by genomax87k
1
vote
2
answers
247
views
2
answers
Comment: C: How to separate a big file into smaller ones using linux commands?
... thanks you! `awk '/^>/ {n++}{print > "output" n ".txt"}' ` worked fine. ...
written 8 months ago by akansha.gitanjali10
0
votes
2
answers
247
views
2
answers
Comment: C: How to separate a big file into smaller ones using linux commands?
... They are copies of the first 13 files ...
written 8 months ago by akansha.gitanjali10
0
votes
2
answers
247
views
2
answers
Comment: C: How to separate a big file into smaller ones using linux commands?
... `awk '/ // / {n++}{print > "output" n ".txt"}' ` works but is creating double the number of files. I have 13 '//' but after splitting the number of new files created are 26. ...
written 8 months ago by akansha.gitanjali10 • updated 8 months ago by genomax87k
0
votes
2
answers
247
views
2
answers
Comment: C: How to separate a big file into smaller ones using linux commands?
... if you can explain what the different / mean that will be very helpful. I am new to linux. ...
written 8 months ago by akansha.gitanjali10
4
votes
2
answers
247
views
2
answers
How to separate a big file into smaller ones using linux commands?
... I have a file that looks like below. I want to separate out the chunks from first '//' to the next '//' and create separate files using linux commands. How can I do that? Position Code Kinase Peptide Score Cutoff //sp|P62754|RS6_MOUSE 40S ribosomal protein S6 OS=Mus musculus O ...
linux bash written 8 months ago by akansha.gitanjali10 • updated 8 months ago by Pierre Lindenbaum129k
0
votes
1
answer
870
views
1
answers
Comment: C: Retrieve multiple FASTA from UniProt using R
... Yes I can download whole proteome from Example Retrieval Uniprot. But I want to use different uniprot identifiers like .................. ids <- c("P62754", "Q8K094", "Q64337") I am using R 3.6.1 which doesn't support BioConductor. What to do? > install.packages("bioconductor ...
written 8 months ago by akansha.gitanjali10 • updated 8 months ago by genomax87k

Latest awards to akansha.gitanjali

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1546 users visited in the last hour