User: Brynjar

gravatar for Brynjar
Brynjar20
Reputation:
20
Status:
New User
Location:
deCODE Genetics, Iceland
Last seen:
2 weeks, 4 days ago
Joined:
1 month ago
Email:
b************@gmail.com

Posts by Brynjar

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Comment: C: Using samtools to view an indexed file in a private S3 bucket
... The presigned URL works fine apart from not recognizing any index file. I just noticed that samtools has added an option for specifying an index file but it has not been officially released yet, I think I'll try cloning it ([Feat/support passing index files][1]). [1]: https://github.com/samtool ...
written 4 weeks ago by Brynjar20
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Comment: C: Using samtools to view an indexed file in a private S3 bucket
... Thanks for the reply. I will have to check better on these privileges. I thought the object file had appropriate ACL for the given credentials I am using, but perhaps not. I can't use the AWS CLI as our research network is offline and there is probably not a mirror for it. I will have to ask our I ...
written 4 weeks ago by Brynjar20
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Using samtools to view an indexed file in a private S3 bucket
... I'm trying to use samtools to view an indexed CRAM file which is stored on our private s3 bucket. I have the config and credential files $ cat ~/.aws/config [default] s3= addressing_style=path output=json region=us-east-1 and $ cat ~/.aws/credentials [default] aws ...
samtools amazon-s3 written 4 weeks ago by Brynjar20

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