User: Madhav Nepal

gravatar for Madhav Nepal
Madhav Nepal40
Reputation:
40
Status:
New User
Location:
USA/Brookings/South Dakota State University
Website:
https://www.sdstate.ed...
Last seen:
2 weeks, 2 days ago
Joined:
4 weeks ago
Email:
m***********@sdstate.edu

Posts by Madhav Nepal

<prev • 5 results • page 1 of 1 • next >
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Comment: C: Advice on publishing maximum likelihood trees
... Hello, I would definitely prefer a majority-rule ML tree or strict consensus tree if the data are analyzed by MP method. However, as you mentioned, the distinctions are rarely made in articles majority of the cases. ...
written 20 days ago by Madhav Nepal40
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Answer: A: tree obtained from neighbor-joining and maximum-likelihood are different.
... N-J method is a distance-based (phenetic) method which is good to infer genetic distance or clustering but not good for phylogenetic analysis. If you would like to infer phylogentic relationships (=evolutionary history), please use either ML or Bayesian method,, not the NJ method. [Click here][1] fo ...
written 22 days ago by Madhav Nepal40
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Comment: C: Using ML tree or bootstrapped tree
... I am a Biostar new user. Although it is late, I am posting my answer assuming other users might benefit from this post. I always use the ML tree with the bootstrap values, as those values are important to assess the clade supports in phylogenetic analyses. ...
written 22 days ago by Madhav Nepal40
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Answer: A: Public access databases specialized in data from Assisted Human Reproduction?
... You can access publicly available data (for the United States) at the CDC site https://www.cdc.gov/art/artdata/index.html ...
written 22 days ago by Madhav Nepal40
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In addition to Bootstrap Values, what other statistics are used to indicate clade supports in phylogenetic analyses?
... Dear Biostars community, I have been using bootstrap values (statistics) as a clade supports in phylogenetics. I was wondering if there were other statistics more reliable than bootstrap for rigorous analyses. Thank you in advance for your input. ...
genome sequence alignment sequencing written 22 days ago by Madhav Nepal40

Latest awards to Madhav Nepal

Teacher 21 days ago, created an answer with at least 3 up-votes. For A: Public access databases specialized in data from Assisted Human Reproduction?
Scholar 22 days ago, created an answer that has been accepted. For A: Public access databases specialized in data from Assisted Human Reproduction?

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