User: Rashedul Islam

gravatar for Rashedul Islam
Reputation:
340
Status:
Trusted
Location:
Canada
Website:
http://www.chibi.ubc.c...
Scholar ID:
Google Scholar Page
Last seen:
16 hours ago
Joined:
7 years, 3 months ago
Email:
r***********@gmail.com

Posts by Rashedul Islam

<prev • 58 results • page 1 of 6 • next >
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
... If you can convert "B data set" as bed file, you could use bedtools intersect. ...
written 4 weeks ago by Rashedul Islam340
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Answer: A: Larger number of reads are aligned than input reads
... Same question [duplicated here][1]. [1]: https://www.biostars.org/p/326276/ ...
written 4 weeks ago by Rashedul Islam340
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Answer: A: How to find which genes are missing?
... If I understand you question correctly - you want to get the genes that are not present in known chloroplasts genomes and you have the assembled genes of the chloroplast genome of your interest. For that you can use blastn. ...
written 4 weeks ago by Rashedul Islam340
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Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
... You can check the "Oct. 11, 2019 New "group auto-scale" option" [here][1]. Example track file for group of tracks: [1]: http://genome.ucsc.edu/goldenPath/newsarch.html#101119 bigWig track myComposite compositeTrack on shortLabel test longLabel my_comp_testing ...
written 4 weeks ago by Rashedul Islam340
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Answer: A: DNA-Methylation downstream analysis using deepTOOLS or bedops
... Yes, it is possible. Please look at the example codes here: https://deeptools.readthedocs.io/en/develop/content/tools/plotProfile.html You can provide bed files for genomic regions. ...
written 5 weeks ago by Rashedul Islam340
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Answer: A: Where Can I Find Mutation Databases Specialized In Cancer?
... cBioPortal has mutation data for different cancer types including breast. http://www.cbioportal.org/ ...
written 5 weeks ago by Rashedul Islam340
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Comment: C: What does arrow+box mean in UCSC genome browser?
... @Luis, Thanks a lot for such a detailed reply. I understand most of it but can you elaborate on this sentence "There is sequence for both the query and the target genome that differs here"? Did you mean mismatches present in query by "both the query and the target genome that differs"? FYI, The im ...
written 7 weeks ago by Rashedul Islam340
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What does arrow+box mean in UCSC genome browser?
... I used BLAT to find the match of query B-cell receptor transcript. What does arrow+box (shown in green box) mean in UCSC genome browser? Can anyone help? [the screenshot is here][1] [1]: https://ibb.co/RSbdzG6 ...
alignment written 8 weeks ago by Rashedul Islam340 • updated 8 weeks ago by Luis Nassar180
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Comment: C: Reads and Read Segments in Alignment
... That worked for me. Thanks! ...
written 4 months ago by Rashedul Islam340
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Comment: C: BLAST database with local sequences
... That was very helpful, worked for me. ...
written 5 months ago by Rashedul Islam340

Latest awards to Rashedul Islam

Scholar 4 weeks ago, created an answer that has been accepted. For C: fastq-dump error for restricted data from dbGAP
Supporter 7 weeks ago, voted at least 25 times.
Great Question 7 months ago, created a question with more than 5,000 views. For Drawing venn diagram in R
Epic Question 15 months ago, created a question with more than 10,000 views. For Drawing venn diagram in R
Popular Question 15 months ago, created a question with more than 1,000 views. For Matching gene id and extracting fasta sequences using shell script
Popular Question 15 months ago, created a question with more than 1,000 views. For Drawing venn diagram in R
Scholar 15 months ago, created an answer that has been accepted. For C: fastq-dump error for restricted data from dbGAP
Good Answer 21 months ago, created an answer that was upvoted at least 5 times. For C: Linux for loop for 2 inputs and 4 outputs for Trimmomatic fastq quality trimming
Student 21 months ago, asked a question with at least 3 up-votes. For Drawing venn diagram in R
Popular Question 2.3 years ago, created a question with more than 1,000 views. For Matching gene id and extracting fasta sequences using shell script
Great Question 2.7 years ago, created a question with more than 5,000 views. For Cufflinks error: BAM record error: found spliced alignment without XS attribute
Teacher 2.7 years ago, created an answer with at least 3 up-votes. For C: Linux for loop for 2 inputs and 4 outputs for Trimmomatic fastq quality trimming
Epic Question 3.1 years ago, created a question with more than 10,000 views. For Drawing venn diagram in R
Student 3.3 years ago, asked a question with at least 3 up-votes. For Drawing venn diagram in R
Great Question 3.7 years ago, created a question with more than 5,000 views. For Drawing venn diagram in R
Popular Question 3.7 years ago, created a question with more than 1,000 views. For Drawing venn diagram in R
Popular Question 4.2 years ago, created a question with more than 1,000 views. For Drawing venn diagram in R
Popular Question 4.9 years ago, created a question with more than 1,000 views. For Cufflinks error: BAM record error: found spliced alignment without XS attribute

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