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Comment: Comment: how to extract unique variants from GVCF
2.0 years ago by Rashedul Islam ▴ 470
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1.0k
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Answer: Answer: Divide the genome to vary lengths windows in R
2.8 years ago by Rashedul Islam ▴ 470
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819
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Comment: Comment: adding gene symbol to bed file
2.9 years ago by Rashedul Islam ▴ 470
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917
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Comment: Comment: ChIP-seq correlation with CNS
2.9 years ago by Rashedul Islam ▴ 470
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13k
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Answer: Answer: How to work out Z score for heatmaps for RNA seq dataset
2.9 years ago by Rashedul Islam ▴ 470
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72k
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Answer: A: Extract fasta sequences from a file using a list in another file.
3.2 years ago by Rashedul Islam ▴ 470
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9.1k
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Comment: C: How do I extract Fasta Sequences based on a list of IDs?
3.2 years ago by Rashedul Islam ▴ 470
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740
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Comment: C: Contigs have different mutations than raw reads
3.5 years ago by Rashedul Islam ▴ 470
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2
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740
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Contigs have different mutations than raw reads
mutation-calling Assembly
updated 13 months ago by 43k • written 3.5 years ago by ▴ 470
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761
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Comment: C: Different assembler and difference in genomic variants. Is it possible?
3.5 years ago by Rashedul Islam ▴ 470
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4
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761
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Different assembler and difference in genomic variants. Is it possible?
Assembly
3.5 years ago by Rashedul Islam ▴ 470
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761
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Comment: C: Different assembler and difference in genomic variants. Is it possible?
3.5 years ago by Rashedul Islam ▴ 470
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1.2k
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Answer: A: clusters generated by plotHeatmap of deeptools
3.7 years ago by Rashedul Islam ▴ 470
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1.3k
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Comment: C: Alternative splicing event annotations method
3.9 years ago by Rashedul Islam ▴ 470
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1.1k
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Comment: C: Log2 fold change correlation for ChIP seq data - do I need a FDR cut off?
3.9 years ago by Rashedul Islam ▴ 470
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1
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1.3k
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from unmapped bam file picard samtofastq produced no output
RNA-Seq picard bedtools
updated 3.9 years ago by • 0 • written 4.1 years ago by ▴ 470
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2.8k
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Answer: A: How to extract a fasta sequence from a batch of multiple fasta genome files
4.1 years ago by Rashedul Islam ▴ 470
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3.8k
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Comment: C: How to round the "expected counts" to integers?
4.1 years ago by Rashedul Islam ▴ 470
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0
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2.6k
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Comment: C: bedtools bamtofastq: Segmentation fault (core dumped)
4.1 years ago by Rashedul Islam ▴ 470
5
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3
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2.6k
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bedtools bamtofastq: Segmentation fault (core dumped)
bedtools bamtofastq bam RNA-seq
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 470
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2.7k
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Answer: A: what are the big questions in bioinformatics field nowadays
4.2 years ago by Rashedul Islam ▴ 470
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1.3k
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Comment: C: Alternative splicing event annotations method
4.2 years ago by Rashedul Islam ▴ 470
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3
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1.3k
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Alternative splicing event annotations method
MISO RNA-Seq
updated 4.2 years ago by 15k • written 4.2 years ago by ▴ 470
1
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0
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12k
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Answer: A: Match And Merge Information By Id In Two Files
updated 4.3 years ago by 43k • written 6.9 years ago by ▴ 470
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5.0k
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Answer: A: UCSC Viewer : Adjust all tracks on the same scale at the same time.
4.5 years ago by Rashedul Islam ▴ 470
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1
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1.8k
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Comment: C: Comparing values of a column if it falls between values of two columns of a diff
4.5 years ago by Rashedul Islam ▴ 470
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1
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955
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Answer: A: How to find which genes are missing?
4.5 years ago by Rashedul Islam ▴ 470
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1.9k
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Answer: A: DNA-Methylation downstream analysis using deepTOOLS or bedops
4.5 years ago by Rashedul Islam ▴ 470
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0
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22k
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Answer: A: Where Can I Find Mutation Databases Specialized In Cancer?
4.5 years ago by Rashedul Islam ▴ 470
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2.0k
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Comment: C: What does arrow+box mean in UCSC genome browser?
4.6 years ago by Rashedul Islam ▴ 470
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2
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2.0k
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What does arrow+box mean in UCSC genome browser?
alignment
updated 4.6 years ago by ▴ 650 • written 4.6 years ago by ▴ 470
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3.9k
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Comment: C: Reads and Read Segments in Alignment
4.8 years ago by Rashedul Islam ▴ 470
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1
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6.4k
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Comment: C: BLAST database with local sequences
4.8 years ago by Rashedul Islam ▴ 470
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2.2k
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Comment: C: counting number of CpGs that are methylated and unmethylated in a read of whole
4.9 years ago by Rashedul Islam ▴ 470
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2
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2.2k
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Comment: C: counting number of CpGs that are methylated and unmethylated in a read of whole
4.9 years ago by Rashedul Islam ▴ 470
7
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6
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2.2k
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counting number of CpGs that are methylated and unmethylated in a read of whole genome bisulfite data
next-gen sequencing genome
updated 17 months ago by • 0 • written 4.9 years ago by ▴ 470
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1
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794
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Comment: C: How can I get the names of bams that were merged
5.0 years ago by Rashedul Islam ▴ 470
1
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3
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794
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How can I get the names of bams that were merged
alignment sequence
updated 5.0 years ago by 9.7k • written 5.0 years ago by ▴ 470
3
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1
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8.1k
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Answer: A: BWA mem error: [bwt_restore_sa] SA-BWT inconsistency: seq_len is not the same.
5.1 years ago by Rashedul Islam ▴ 470
5
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2
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12k
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Answer: Answer: Linux for loop for 2 inputs and 4 outputs for Trimmomatic fastq quality trimming
updated 18 months ago by 43k • written 8.7 years ago by ▴ 470
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1
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1.7k
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Comment: C: Enrichment Analysis in R
5.7 years ago by Rashedul Islam ▴ 470
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1
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1.6k
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Comment: C: ChromHMM segmenting only 1 chromosome
5.7 years ago by Rashedul Islam ▴ 470
2
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3.3k
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Answer: C: fastq-dump error for restricted data from dbGAP
5.7 years ago by Rashedul Islam ▴ 470
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1.8k
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Answer: A: Can we compare peaks of different transcription factors when they were obtained
5.7 years ago by Rashedul Islam ▴ 470
1
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0
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2.1k
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Answer: A: GSEA top genes vs all platform
5.7 years ago by Rashedul Islam ▴ 470
1
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1
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9.1k
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Answer: A: How do I extract Fasta Sequences based on a list of IDs?
5.7 years ago by Rashedul Islam ▴ 470
0
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0
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3.3k
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Comment: C: fastq-dump error for restricted data from dbGAP
5.7 years ago by Rashedul Islam ▴ 470
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0
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1.9k
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Comment: C: ChipSeeker Heatmap (y-axis)?
5.7 years ago by Rashedul Islam ▴ 470
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0
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1.9k
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Answer: A: ChipSeeker Heatmap (y-axis)?
5.7 years ago by Rashedul Islam ▴ 470
2
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0
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4.7k
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Answer: A: obtaining unique peaks in DiffBind
5.7 years ago by Rashedul Islam ▴ 470
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