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0
votes
2
replies
742
views
Contigs have different mutations than raw reads
mutation-calling Assembly
updated 13 months ago by 43k • written 3.5 years ago by ▴ 470
0
votes
4
replies
762
views
Different assembler and difference in genomic variants. Is it possible?
Assembly
3.5 years ago by Rashedul Islam ▴ 470
0
votes
1
reply
1.3k
views
from unmapped bam file picard samtofastq produced no output
RNA-Seq picard bedtools
updated 4.0 years ago by • 0 • written 4.1 years ago by ▴ 470
5
votes
3
replies
2.6k
views
bedtools bamtofastq: Segmentation fault (core dumped)
bedtools bamtofastq bam RNA-seq
updated 4.1 years ago by 35k • written 4.1 years ago by ▴ 470
0
votes
3
replies
1.3k
views
Alternative splicing event annotations method
MISO RNA-Seq
updated 4.2 years ago by 15k • written 4.2 years ago by ▴ 470
4
votes
2
replies
2.0k
views
What does arrow+box mean in UCSC genome browser?
alignment
updated 4.6 years ago by ▴ 650 • written 4.6 years ago by ▴ 470
7
votes
6
replies
2.2k
views
counting number of CpGs that are methylated and unmethylated in a read of whole genome bisulfite data
next-gen sequencing genome
updated 17 months ago by • 0 • written 4.9 years ago by ▴ 470
1
vote
3
replies
796
views
How can I get the names of bams that were merged
alignment sequence
updated 5.0 years ago by 9.7k • written 5.0 years ago by ▴ 470
2
votes
6
replies
3.3k
views
fastq-dump error for restricted data from dbGAP
sequencing next-gen
updated 5.7 years ago by 16k • written 5.7 years ago by ▴ 470
6
votes
4
replies
4.0k
views
How can I locate motif in DNA sequence.
ChIP-Seq
6.4 years ago by Rashedul Islam ▴ 470
21
votes
10
replies
12k
views
7 follow
Linux for loop for 2 inputs and 4 outputs for Trimmomatic fastq quality trimming
fastq
updated 16 months ago by 43k • written 8.9 years ago by ▴ 470
5
votes
3
replies
5.4k
views
Is rs# of an SNP comparable between genome version or build?
SNP
6.9 years ago by Rashedul Islam ▴ 470
1
vote
3
replies
3.9k
views
Matching gene id and extracting fasta sequences using shell script
fasta shell
updated 16 months ago by 43k • written 8.8 years ago by ▴ 470
13
votes
3
replies
34k
views
Drawing venn diagram in R
ChIP-Seq venn-diagram
updated 13 months ago by 43k • written 9.0 years ago by ▴ 470
7
votes
8
replies
19k
views
Cufflinks error: BAM record error: found spliced alignment without XS attribute
Cufflinks BWA RNA-Seq
updated 2.2 years ago by 43k • written 9.5 years ago by ▴ 470
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