User: prernagoel04

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Posts by prernagoel04

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How to calculate allele counts(Ref and alt) using a target bed file and aligned bam sample files
... Hi all. I have multiple .bam files(aligned RNA-Seq data) and I have a set of regions from all the files (chr str stp) in a bed format. I would like to check for variants only in these regions rather through out the genome. Specifically, I want the allele counts for Ref and Alt at all of the positio ...
count allele samtools rna-seq mpileup written 16 days ago by prernagoel040 • updated 16 days ago by H.Hasani760
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Matching mutation in bed files to their corresponding bam files
... Hi all. I am doing an RNA Seq analysis for which I have created a few BAM files after alignment of the sequences to reference genome. I already have a .bed file which has some specific mutations from the same data(i.e a single file having mutations from all samples). I want to match those mutations ...
bedtools rna-seq written 19 days ago by prernagoel040 • updated 18 days ago by bari.ballew110

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