User: sah9b

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sah9b100
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United States
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4 years, 11 months ago
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6 years, 9 months ago
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Posts by sah9b

<prev • 5 results • page 1 of 1 • next >
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determining isoform usage with Jensen-Shannon metric and eXpress output
... Hi All, I am attempting to apply the Jensen-Shannon divergence strategy for detecting differential isoform usage, which is implemented by cuffdiff2 (detailed in the supplement of Trapnell et al.), to estimates calculated by eXpress. Before pressing ahead I wanted to make sure that I am not making a ...
express cufflinks isoforms rna-seq written 5.0 years ago by sah9b100 • updated 2.1 years ago by Lalla40
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Answer: A: Display Bed In Igv
... You probably want to turn it into a bedGraph file. That is, remove the UCSC IDs and strand information so your file has 4 fields: chr, start, end, and pileup level. ...
written 6.4 years ago by sah9b100
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Visualizing Genomic Interactions
... Hi, I'm looking for a way to view genomic interactions data generated by ChIA-pet or chromosome conformation capture technologies. I'm not interested in circos plots or heat maps, I want an interactive genome browser solution. For an example of what I'm looking for check out the browser shots this ...
visualization genomics written 6.4 years ago by sah9b100 • updated 5.5 years ago by Lynxoid220
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Solid Data From Sra
... Hi, I downloaded some SOLiD data from SRA. I unarchived the data using the SRA toolkit, but I have no idea what the file format is. It seems to be non-standard, but I could be wrong. Any help figuring out what file format this is would be appreciated. Here is what the file looks like for the first ...
bioinformatics solid sra written 6.5 years ago by sah9b100 • updated 5.2 years ago by Biostar ♦♦ 20
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S. Cerevisiae Synthetic Lethal Database
... Does anyone know of a comprehensive database of synthetic lethality in yeast? ...
database written 6.5 years ago by sah9b100 • updated 5.8 years ago by Biostar ♦♦ 20

Latest awards to sah9b

Appreciated 6.3 years ago, created a post with more than 5 votes. For Visualizing Genomic Interactions
Popular Question 6.3 years ago, created a question with more than 1,000 views. For Visualizing Genomic Interactions
Student 6.3 years ago, asked a question with at least 3 up-votes. For Visualizing Genomic Interactions

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