User: mgmohsen

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mgmohsen0
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Posts by mgmohsen

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Comment: C: STAR alignment - segmentation fault error
... Sorry, I meant to say that I used GenCode files (fasta, gtf) to generate the genome, which I did using STAR. ...
written 13 months ago by mgmohsen0
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Comment: C: STAR alignment - segmentation fault error
... Trying the alignment again with a subset of the first 1000 reads, I get the following error message: ReadAlignChunk_processChunks.cpp:115:processChunks EXITING because of FATAL ERROR in input reads: unknown file format: the read ID should start with @ or > Jul 08 15:09:01 ...... F ...
written 13 months ago by mgmohsen0
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STAR alignment - segmentation fault error
... Hi all, I submitted the following job (star_align.sh) using slurm to align a fastq read to a reference genome that I generated using GenCode v30: STAR --runThreadN 16 --readFilesCommand zcat --quantMode GeneCounts --genomeDir ~/directory/to/genome/ --readFilesIn ~/directory/to/file.fastq.gz H ...
alignment rna-seq written 13 months ago by mgmohsen0

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