User: mdfardin374

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Posts by mdfardin374

<prev • 19 results • page 1 of 2 • next >
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Comment: C: protein and sequence
... It has only a few organisms ...
written 5 days ago by mdfardin3740
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protein and sequence
... Hello, Can somebody tell me how to download the total protein sequence of an organism from NCBI? ...
sequence protein written 5 days ago by mdfardin3740
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Comment: C: predicted protein and sequence
... The organism is Plasmodium Berghei and I tried NCBI database but do not know exactly what to see ...
written 3 months ago by mdfardin3740
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predicted protein and sequence
... Hello, I have a list of genes and I am interested to know whether these genes have any experimental evidence either at RNA or protein level. How to go about this please let me know. Thank you ...
genome gene written 3 months ago by mdfardin3740 • updated 3 months ago by genomax85k
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Comment: C: predicted protein and sequence
... The transcriptome was translated into three frames and the obtained peptide was MS/MS analyzed. The genome sequence is correct. ...
written 4 months ago by mdfardin3740
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predicted protein and sequence
... Hello all, I have a peptide of 20 aa. When I map this peptide to the genome, the first 12 aa map to exon1 in frame 1 and last 8 aa map to exon2 in frame 3. Is it possible? ...
genome alignment written 4 months ago by mdfardin3740
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predicted protein and sequence
... Dear all, I have a list of peptide and I want to see the position of the peptide relative to the gene in the genome. Whether this peptide map to the gene completely or partially or it map to intron or in a different frame ...
genome alignment written 5 months ago by mdfardin3740
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tblastn genome co-ordinate
... Hello everyone, I am trying to do tBLASTn for 500 peptide sequence derived from 6 frame translation of genome to get their genomic co-ordinate. Please tell me what cut off e-value should I keep so that every peptide in the database get hit. Should I also change the value of word size? Thank you ...
genome alignment written 6 months ago by mdfardin3740
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Comment: C: genomic co-ordinate, map
... Its genomic DNA database but in case of exon/exon boundaries it can show the span region. ...
written 6 months ago by mdfardin3740
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Comment: C: genomic co-ordinate, map
... Yes I have considered the possibility of "hit"; almost every peptide has hit in the database ...
written 6 months ago by mdfardin3740

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