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2
votes
1
reply
505
views
What is the largest freely available dataset of WGS samples?
wgs
updated 17 months ago by ▴ 240 • written 17 months ago by ▴ 100
0
votes
1
reply
767
views
How to best predict effect for each variant and count specific effect found in each individual using variant effect predictor?
vcf vep
updated 18 months ago by 23k • written 18 months ago by ▴ 100
0
votes
1
reply
1.3k
views
Comment: Comment: How to pass custom software specific variables to nf-core/sarek nextflow pipelin
20 months ago by optimistsso4co3 ▴ 100
0
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2
replies
1.3k
views
Comment: Comment: How to pass custom software specific variables to nf-core/sarek nextflow pipelin
21 months ago by optimistsso4co3 ▴ 100
2
votes
5
replies
1.3k
views
How to pass custom software specific variables to nf-core/sarek nextflow pipeline?
wgs
updated 19 months ago by ★ 1.1k • written 21 months ago by ▴ 100
0
votes
0
replies
824
views
Comment: Comment: How to paralle trim_galore for single sample?
21 months ago by optimistsso4co3 ▴ 100
4
votes
5
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824
views
How to paralle trim_galore for single sample?
trim_galore
updated 21 months ago by 71k • written 21 months ago by ▴ 100
0
votes
0
replies
394
views
What causes highly inflated p values of X chromosome in PLINK association analysis?
plink
2.4 years ago by optimistsso4co3 ▴ 100
0
votes
1
reply
711
views
Whats the format for PLINK .set file for epistasis analysis?
plink epistasis .set
updated 2.5 years ago by 10.0k • written 2.5 years ago by ▴ 100
0
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0
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2.2k
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Comment: C: GTEX - how to upload more than one rsIDs to get gene expression or eQTL informat
2.5 years ago by optimistsso4co3 ▴ 100
0
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1
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2.2k
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Answer: A: GTEX - how to upload more than one rsIDs to get gene expression or eQTL informat
2.5 years ago by optimistsso4co3 ▴ 100
0
votes
2
replies
560
views
What's the probability of genotype error at the end of 10 repeated A variants? Given low coverage sequencing of 1000G phase 1
sequencing error
2.9 years ago by optimistsso4co3 ▴ 100
0
votes
1
reply
571
views
How to save SNPs removed by quality control? Plink
plink
3.1 years ago by optimistsso4co3 ▴ 100
3
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3
replies
1.3k
views
Whats the point of genotype pruning before imputation?
imputation plink --indep-pariwise r2
3.7 years ago by optimistsso4co3 ▴ 100
0
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0
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1.3k
views
Comment: C: Whats the point of genotype pruning before imputation?
3.7 years ago by optimistsso4co3 ▴ 100
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