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5
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5
replies
2.2k
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WGCNA HeatMap correlating modules and sample conditions
RNAseq heatmap WGCNA conditions clustering
updated 7 weeks ago by 141k • written 2.1 years ago by ▴ 90
0
votes
4
replies
1.2k
views
WGCNA Analysis - blockwiseModules data processing
WGCNA blockwiseModules
updated 5 months ago by 141k • written 7 months ago by ▴ 90
0
votes
0
replies
254
views
WGCNA Analysis - TOM matrix generation time estimation
WGCNA TOM R
7 months ago by Raito92 ▴ 90
0
votes
1
reply
843
views
Comment: Comment: Looking for tools to individuate gene-gene correlations from a few candidates
15 months ago by Raito92 ▴ 90
2
votes
3
replies
843
views
Looking for tools to individuate gene-gene correlations from a few candidates
CoExpNetViz Cytoscape network coexpression RNA-Seq
updated 15 months ago by 9.7k • written 15 months ago by ▴ 90
0
votes
1
reply
562
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Cytoscape plugin CoExpNetViz giving unreproducible results over time
CoExpNetViz Cytoscape network coexpression RNA-Seq
updated 15 months ago by ▴ 280 • written 15 months ago by ▴ 90
0
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0
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551
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KEGG pathway annotation and enrichment analysis on an unannotated organism
kegga KEGG enrichment annotation DEG
16 months ago by Raito92 ▴ 90
2
votes
1
reply
1.1k
views
Weird behaviour - WGCNA hub analysis results in Cytoscape through CytoHubba plugin change every time I run it!
rnaseq wgcna cytoscape hubs cytohubba
updated 21 months ago by ▴ 620 • written 22 months ago by ▴ 90
0
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0
replies
2.6k
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Plotting Gene Ontology analysis results and questions about Fold Enrichment and other parameters
Ontology Enrichment Gene GO
2.1 years ago by Raito92 ▴ 90
1
vote
1
reply
1.7k
views
WGCNA exportNetworkToCytoscape weight threshold
co-expression RNA-Seq WGCNA Cytoscape
updated 2.1 years ago by ▴ 620 • written 2.1 years ago by ▴ 90
0
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1
reply
2.2k
views
Comment: Comment: WGCNA HeatMap correlating modules and sample conditions
2.1 years ago by Raito92 ▴ 90
4
votes
8
replies
3.8k
views
7 follow
Converting an output de-novo transcriptome assembled with Trinity to a .gff3 file
Trinity
updated 13 months ago by 8.5k • written 4.6 years ago by ▴ 90
0
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1
reply
1.7k
views
Comment: C: How to merge two gff3 files?
3.2 years ago by Raito92 ▴ 90
2
votes
3
replies
1.7k
views
How to merge two gff3 files?
gff3 merge
updated 3.2 years ago by 15k • written 3.2 years ago by ▴ 90
0
votes
0
replies
734
views
A RNASeq gene expression browser
RNA-Seq browser gene expression efp
updated 3.3 years ago by 20 • written 3.4 years ago by ▴ 90
3
votes
3
replies
1.9k
views
Trobules using R function goana to perform GO enrichment analysis
r rnaseq go bioconductor de
updated 3.8 years ago by 20 • written 4.0 years ago by ▴ 90
0
votes
0
replies
660
views
How to analyze RNA Targeted (Gene Panel) Ampliseq data?
ampliseq rna targeted amplicons panel
3.9 years ago by Raito92 ▴ 90
0
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0
replies
1.9k
views
Comment: C: Trobules using R function goana to perform GO enrichment analysis
4.0 years ago by Raito92 ▴ 90
0
votes
0
replies
1.1k
views
Comment: C: Performing GO enrichment analyis on DE genes
4.0 years ago by Raito92 ▴ 90
1
vote
3
replies
1.1k
views
Performing GO enrichment analyis on DE genes
de go enrichment rnaseq
4.0 years ago by Raito92 ▴ 90
0
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1
reply
2.1k
views
Comment: C: Trimmomatic parameters for Trinity transcriptome assembling
4.1 years ago by Raito92 ▴ 90
0
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1
reply
2.1k
views
Comment: C: Trimmomatic parameters for Trinity transcriptome assembling
4.1 years ago by Raito92 ▴ 90
0
votes
0
replies
1.0k
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Comment: C: min_contig_length parameter in Trinity - Isoforms discrimination
4.1 years ago by Raito92 ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: Trimmomatic parameters for Trinity transcriptome assembling
4.1 years ago by Raito92 ▴ 90
1
vote
2
replies
1.0k
views
min_contig_length parameter in Trinity - Isoforms discrimination
transcriptome assembly trinity
4.1 years ago by Raito92 ▴ 90
3
votes
7
replies
2.1k
views
Trimmomatic parameters for Trinity transcriptome assembling
trimmomatic trinity Assembly transcriptome
4.1 years ago by Raito92 ▴ 90
0
votes
1
reply
2.6k
views
Comment: C: How to distinguish between 16S chloroplast reads and real bacteria ones?
4.4 years ago by Raito92 ▴ 90
0
votes
2
replies
2.6k
views
Comment: C: How to distinguish between 16S chloroplast reads and real bacteria ones?
4.4 years ago by Raito92 ▴ 90
4
votes
9
replies
2.6k
views
How to distinguish between 16S chloroplast reads and real bacteria ones?
metagenomics primers qiime2 sequencing 16s
updated 4.4 years ago by 3.6k • written 4.4 years ago by ▴ 90
0
votes
1
reply
2.6k
views
Comment: C: How to distinguish between 16S chloroplast reads and real bacteria ones?
4.4 years ago by Raito92 ▴ 90
3
votes
3
replies
852
views
Most recent tools for circadian gene expression analysis (in plants)
circadian circadian rhythm circadian genes
updated 4.5 years ago by 12k • written 4.6 years ago by ▴ 90
0
votes
0
replies
1.6k
views
Comment: C: How to perform KEGG enrichment analysis for DE genes from a de-novo transcriptom
4.5 years ago by Raito92 ▴ 90
4
votes
2
replies
1.6k
views
How to perform KEGG enrichment analysis for DE genes from a de-novo transcriptome?
KEGG KEGG Enrichment
4.6 years ago by Raito92 ▴ 90
2
votes
1
reply
1.4k
views
GOplot error - Gene Ontology plot generation errors
goplot gene ontology trinity bioconductor
4.6 years ago by Raito92 ▴ 90
0
votes
1
reply
3.8k
views
Comment: C: Converting an output de-novo transcriptome assembled with Trinity to a .gff3 fil
4.6 years ago by Raito92 ▴ 90
5
votes
5
replies
5.7k
views
6 follow
GO enrichment analysis graphs after goseq: any easy solutions?
go enrichment gene ontology go terms goseq
updated 16 months ago by • 0 • written 4.6 years ago by ▴ 90
0
votes
2
replies
1.6k
views
Trinity RSEM Bowtie2 align_and_estimate_abundance script error
trinity rsem bowtie2 RNA-Seq
updated 4.6 years ago by 141k • written 4.6 years ago by ▴ 90
0
votes
0
replies
711
views
Molecular timetable method based tools for circadian gene expression?
circadian genes circadian gene expression
4.6 years ago by Raito92 ▴ 90
1
vote
0
replies
852
views
Comment: C: Most recent tools for circadian gene expression analysis (in plants)
4.6 years ago by Raito92 ▴ 90
0
votes
0
replies
876
views
Answer: A: mpiblast returning an error with a specific FASTA file - Unable to open files
4.7 years ago by Raito92 ▴ 90
1
vote
3
replies
876
views
mpiblast returning an error with a specific FASTA file - Unable to open files
mpiblast blast blastx
4.7 years ago by Raito92 ▴ 90
0
votes
0
replies
876
views
Comment: C: mpiblast returning an error with a specific FASTA file - Unable to open files
4.7 years ago by Raito92 ▴ 90
0
votes
1
reply
946
views
Comment: C: How to retrieve the original protein code before it has been published on NCBI a
4.7 years ago by Raito92 ▴ 90
1
vote
3
replies
946
views
How to retrieve the original protein code before it has been published on NCBI as XP_?
genbank accession number annotation transcripts
4.7 years ago by Raito92 ▴ 90
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