User: sgoetz123

gravatar for sgoetz123
sgoetz12320
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20
Status:
New User
Location:
Valencia
Website:
www.blast2go.com
Last seen:
1 month ago
Joined:
8 years, 3 months ago
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s********@gmail.com

Blast2GO Developer

Posts by sgoetz123

<prev • 6 results • page 1 of 1 • next >
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Comment: C: about blast2go problem
... All these Blast2GO features and more are now available via OmicsBox from https://www.biobam.com/omicsbox/ ...
written 4 weeks ago by sgoetz12320
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Answer: A: xml file import in omicsbox blast2go and daa files in megan
... Hi. The XML files you need for importing blast results in OmicsBox to perform functional annotation with the Blast2GO methodology need to have specific formatting to be able to be used correctly (you can not use megan files for this). This is important because the IDs of the blast hits have to be p ...
written 6 months ago by sgoetz12320
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Answer: A: KEGG pathway visualization AND Cytoscape
... Hello. You could try the Paintomics tool which generates a network of KEGG pathways and allows you to also add expression and other omics data. See here for more information: [http://www.paintomics.org/] ...
written 15 months ago by sgoetz12320
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Answer: A: Help! Gene Ontology Enrichment Analysis
... You could use the OmicsBox Software (https://www.biobam.com/omicsbox/) to do Gene Ontology Enrichment Analysis. You can have a look at the user manual here for GSEA and the Fishers Exact Test here: http://manual.omicsbox.biobam.com/user-manual/module-functional-analysis/enrichment-analysis/ If you ...
written 15 months ago by sgoetz12320
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Answer: A: Blast2GO tolerant susceptible stress
... Hi Susana. I guess you are interested in doing a Functional Enrichment Analysis by comparing differentially expressed genes (DEG) of 2 potato cultivars against each other. This can be done with Blast2GO and the Fisher's Exact Test: https://www.blast2go.com In your scenario you would need to have ...
written 2.7 years ago by sgoetz12320
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Answer: A: GOstats for non model organism
... If you want to perform Enrichment Analysis with GOstat, rather than Blast2GO, you can export the functional annotation (GO terms) you generated with Blast2GO in GOstat format and upload them with "Upload Custom GO Annotations" at http://gostat.wehi.edu.au/cgi-bin/customGOindexes.pl. You can export ...
written 5.0 years ago by sgoetz12320 • updated 12 months ago by _r_am31k

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