User: Riri

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Riri0
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Posts by Riri

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Comment: C: Need suggestions in subsetting the Annovar annotated VCF file
... Hi Manuel, Thank you for your response. I tried using tabular.txt to filter, but it is missing my Sample IDs that are present in the corresponding VCF file, so it is not very helpful. The VCF file I have is around 95 GB and it has 1048 samples. Is it normal for tabular.txt to not have Sample IDs? ...
written 19 days ago by Riri0
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Need suggestions in subsetting the Annovar annotated VCF file
... Hello Everyone, I am fairly novice Bioinformatician. I need some help and suggestions on tools that I can use to subset my annotated vcf file using specific criteria. The criteria are: (i) Coding and Splice site variants (ii) CADD > 10 if nonsynonymous SNPs (iii) AA change: Nonsense (iv) Absent ...
next-gen written 19 days ago by Riri0 • updated 19 days ago by manuel.belmadani1.1k

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