User: sofiagreen72211

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Posts by sofiagreen72211

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Comment: C: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
... Thank you for your advise and link. Greatly appreciated! ...
written 15 days ago by sofiagreen7221130
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Comment: C: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
... Thank you for your advise and link. Greatly appreciated! ...
written 15 days ago by sofiagreen7221130
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Answer: A: analysis of multiple batches and multiple treatment conditions in scRNA-seq
... Seurat has recently introduced a new workflow to deal with batch correction: https://satijalab.org/seurat/v3.0/integration.html https://github.com/satijalab/seurat/issues/1224 Hope this helps. ...
written 16 days ago by sofiagreen7221130
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Comment: C: How can I identify cells from Single cell experiment (SCE) using bulk RNA experi
... Thank you for your suggestion. However, I don't want to do a overall comparison between SCE (trt/ctr; log2FC) vs log2FC (RNAseq). The main goal herein is to classify each and every cell from the SCE using the RNA-seq (significant genes signature). Therefore, either a cell will follow the signature ...
written 18 days ago by sofiagreen7221130
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How can I identify cells from Single cell experiment (SCE) using bulk RNA experiment (RNAseq) genes signatures?
... Hello Everyone, I have two experiments: single cell (**SCE**) and RNAseq (**RNA**). Each of these experiments have two groups: control (**ctr**) and treated (**trt**). **Experiment 1:** I've used Seurat pipeline to perform clustering and cell types identification of SCE. **Experiment 2:** I have u ...
bioinformatics next-gen rna-seq R written 19 days ago by sofiagreen7221130 • updated 15 days ago by jared.andrews072.8k

Latest awards to sofiagreen72211

Scholar 16 days ago, created an answer that has been accepted. For A: analysis of multiple batches and multiple treatment conditions in scRNA-seq
Teacher 16 days ago, created an answer with at least 3 up-votes. For A: analysis of multiple batches and multiple treatment conditions in scRNA-seq

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