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Posts by maximus3219
... I mean can I use the .bed file and .txt annotation file from FANTOM5 to determine the location of TSS/first exon, and then to determine any differential usage of TSS/first exon. Any software/program that allows me to do this? ...
... I would like to find out any changes in alternative first exon usage (as surrogate marker for promoter usage) in diffrent genes between cancer and normal samples. There is .bed file and .txt annotation file from FANTOM5 CAGE project, indicating the location of each transcription start sites (TSS). ...
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