User: ayatrience

gravatar for ayatrience
ayatrience0
Reputation:
0
Status:
New User
Last seen:
8 months, 3 weeks ago
Joined:
11 months ago
Email:
a*********@ruri.waseda.jp

Profile information, website and location are not shown for new users.

This helps us discourage the inappropriate use of our site.

Posts by ayatrience

<prev • 5 results • page 1 of 1 • next >
0
votes
0
answers
734
views
0
answers
Comment: C: bulk analysis by seurat
... Thank you for teaching. I did like below. bulk <- CreateSeuratObject(counts=TPM, assay = "RNA") TPM is the list that contains the count data showed in TPM and the rows are genesID and cols are sample name. ...
written 9 months ago by ayatrience0
1
vote
0
answers
734
views
0
answers
bulk analysis by seurat
... Because seurat package is also technically available for bulk RNA-seq analysis and very easy to analyze for my bulk data with several conditions, I am trying to use Seurat for bulk analysis currently. I use TPM countdata (rows are genes and cols are sample name) for CreateSeuratObject but gene na ...
gene name seurat rna-seq written 9 months ago by ayatrience0
0
votes
1
answer
690
views
1
answers
Comment: C: Appropriate gene IDs for enrichment analysis (with clusterProfiler)
... It seems very nice to pick up one. If I want to refer the uniprot annotation score, we also can write down another script using function in "multiVal". I will follow your script and workflow. Thank you very much !! ...
written 11 months ago by ayatrience0
0
votes
1
answer
690
views
1
answers
Comment: A: Appropriate gene IDs for enrichment analysis (with clusterProfiler)
... It seems very nice to pick up one. If I want to refer the uniprot annotation score, we also can write down another script using function in "multiVal". I will follow your script and workflow. Thank you very much !! ...
written 11 months ago by ayatrience0
2
votes
1
answer
690
views
1
answer
Appropriate gene IDs for enrichment analysis (with clusterProfiler)
... Hi, I am trying to do GO&KEGG enrichment analysis using R package, clusterProfiler. I changed gene IDs (ENSEMBL→uniprot) by "bitr" functions for KEGG enrichment analysis. However, "bitr" returned the multiple IDs from single gene sometimes (I changed into ENTREZ id at the same time). I should pi ...
gene R gene ids rna-seq clusterprofiler written 11 months ago by ayatrience0

Latest awards to ayatrience

No awards yet. Soon to come :-)

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 798 users visited in the last hour