User: hd24.bt

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hd24.bt10
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Posts by hd24.bt

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Comment: C: Suggestions for avoiding False Positives while identifying differentially expres
... I tried plotting z-scores after log normalisation as well. But I still get some such results. However, may be I will trust these as it is and go ahead with same result. Thanks for your response. ...
written 13 days ago by hd24.bt10
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Comment: C: Suggestions for avoiding False Positives while identifying differentially expres
... When I plot heatmap for significantly differentially expressed genes like this: topVarGenes <- rownames(sig_de_results) hmcol <- brewer.pal(11,'RdBu') nCounts <- counts(DDS_batch , normalized=TRUE) heatmap(as.matrix(nCounts[topVarGenes, ]), Rowv = NA,Colv = NA, col = hmcol, ...
written 13 days ago by hd24.bt10
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Suggestions for avoiding False Positives while identifying differentially expressed genes with more than 3 samples per group
... Hi, I have RNA seq data with the samples defined as follows: ID level stability type A1 med unstable exp A2 med unstable exp A3 med unstable exp B1 med stable exp B2 med stable exp B3 med stable exp ...
rna-seq written 13 days ago by hd24.bt10 • updated 10 days ago by kristoffer.vittingseerup2.2k

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