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Posts by lg248
... I have used bwa mem to map my contigs back onto my reference genome and looked at it using Artemis. What do you mean call structural variations, and which program would you recommend for this? ...
... Hi, I'm a new bioinformatician and wondering if what I want is possible or even logical. I sequenced (slightly) mutant E coli, genome should be approx 4.6GB. I used SPADES to do a de novo assembly from my paired sequencing but end with 2000 contigs and the largest is 25kb. My sequenced bacteria sh ...
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